Os07g0101200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os07g0101200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.64 | 0.537 | 5.68 | 2.1 | 0.6 | -0.000987 | 0.538 | 3.62 | -0.868 | 11.9 | 10.6 | 1386 | -- | -- |
| 139.45 | 0.55 | 5.82 | 1.04 | 0.611 | 0.317 | 0.402 | -- | -1.22 | 12.5 | 26.17 | 47520 | -- | -- |
| 131.69 | 0.534 | 5.68 | 2.12 | 0.597 | -0.00435 | -- | 3.56 | -0.865 | 12.1 | 11.07 | 1465 | -- | -- |
| 139.6 | 0.55 | 5.82 | 0.961 | 0.598 | 0.367 | -- | -- | -1.25 | 12.1 | 25.9 | 47520 | -- | -- |
| 154.07 | 0.578 | 5.69 | 2.08 | -- | -0.0692 | -- | 3.41 | -0.853 | -- | 14.2 | 1440 | -- | -- |
| 141.76 | 0.558 | 5.78 | 1.32 | 0.588 | -- | 0.405 | -- | -1.07 | 11.9 | -- | -- | -- | -- |
| 142.43 | 0.559 | 5.78 | 1.34 | 0.587 | -- | -- | -- | -1.07 | 12.1 | -- | -- | -- | -- |
| 158.38 | 0.589 | 5.8 | 1.25 | -- | 0.514 | -- | -- | -1.1 | -- | 25.9 | 47520 | -- | -- |
| 147.85 | 0.566 | 5.89 | -- | 0.61 | 0.961 | -- | -- | -1.56 | 12.1 | 19.54 | 47520 | -- | -- |
| 164.1 | 0.599 | 5.79 | 1.32 | -- | -- | -- | -- | -1.08 | -- | -- | -- | -- | -- |
| 189.45 | 0.644 | 5.81 | -- | 0.569 | -- | -- | -- | -1.22 | 12 | -- | -- | -- | -- |
| 171.19 | 0.609 | 5.9 | -- | -- | 0.928 | -- | -- | -1.55 | -- | 19.11 | 47520 | -- | -- |
| 209.86 | 0.676 | 5.83 | -- | -- | -- | -- | -- | -1.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.10 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 2 | 119.19 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 8 | 120.09 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 9 |
| 15 | 121.42 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 28 | 122.27 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 29 | 122.36 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 32 | 122.55 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 13 |
| 47 | 123.08 | radiation | 20.0 | 270 | < th | dose independent | rect. | 13 | 13 |
| 62 | 123.42 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 19 | 9 |
| 69 | 123.53 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 99 | 124.09 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 109 | 124.24 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 4 |
| 122 | 124.47 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 148 | 124.89 | wind | 5.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 187 | 125.41 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 206 | 125.57 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 23 |
| 215 | 125.65 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 6 |
| 233 | 125.86 | wind | 3.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 241 | 125.92 | temperature | 15.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 263 | 126.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 4 |
| 266 | 126.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 271 | 126.12 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 281 | 126.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 285 | 126.22 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 17 |
| 351 | 126.62 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 361 | 126.68 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 370 | 126.73 | radiation | 1.0 | 30 | < th | dose independent | sin | 11 | NA |
| 377 | 126.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 379 | 126.79 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 380 | 126.79 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 383 | 126.79 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 385 | 126.79 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 397 | 126.84 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 399 | 126.84 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 410 | 126.89 | radiation | 1.0 | 30 | > th | dose independent | sin | 11 | NA |
| 430 | 126.99 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 450 | 127.04 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 456 | 127.09 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 468 | 127.09 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 18 |
| 474 | 127.10 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 506 | 127.30 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 633 | 127.75 | radiation | 1.0 | 10 | > th | dose independent | rect. | 14 | 18 |
| 635 | 127.75 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 637 | 127.76 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 647 | 127.80 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 693 | 127.88 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 716 | 127.99 | humidity | 70.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 729 | 128.03 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 15 |
| 732 | 128.03 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 762 | 128.11 | radiation | 10.0 | 10 | < th | dose dependent | sin | 11 | NA |
| 813 | 128.23 | temperature | 25.0 | 90 | > th | dose independent | rect. | 13 | 6 |
| 829 | 128.25 | radiation | 1.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 835 | 128.27 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 864 | 128.31 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 14 | 13 |
| 871 | 128.32 | wind | 9.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 882 | 128.34 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 902 | 128.39 | radiation | 1.0 | 30 | > th | dose independent | rect. | 16 | 16 |
| 903 | 128.39 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 906 | 128.39 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 18 | 12 |
| 940 | 128.45 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 950 | 128.47 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 964 | 128.49 | temperature | 15.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 966 | 128.49 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 980 | 128.52 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 9 |
| 981 | 128.52 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 984 | 128.52 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 9 |
| 989 | 128.52 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 990 | 128.52 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 993 | 128.52 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 9 |