Os07g0101000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os07g0101000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 197.01 | 0.659 | 3.23 | 1.17 | 0.147 | 1.84 | -0.044 | 1.6 | 0.239 | 22.2 | 27.98 | 787 | -- | -- |
| 198.73 | 0.657 | 3.2 | 1.48 | 0.159 | 1.84 | -0.331 | -- | 0.271 | 22 | 30.66 | 833 | -- | -- |
| 196.53 | 0.653 | 3.24 | 1.13 | 0.125 | 1.88 | -- | 1.91 | 0.239 | 22.8 | 27.2 | 857 | -- | -- |
| 199.15 | 0.657 | 3.2 | 1.48 | 0.146 | 1.83 | -- | -- | 0.264 | 22.7 | 31.09 | 856 | -- | -- |
| 196.94 | 0.654 | 3.24 | 1.1 | -- | 1.9 | -- | 2.14 | 0.21 | -- | 24.84 | 862 | -- | -- |
| 244.68 | 0.733 | 3.27 | 0.961 | 0.235 | -- | 0.5 | -- | -0.0704 | 9.16 | -- | -- | -- | -- |
| 245.55 | 0.734 | 3.27 | 0.979 | 0.233 | -- | -- | -- | -0.0696 | 9.36 | -- | -- | -- | -- |
| 200.33 | 0.659 | 3.2 | 1.46 | -- | 1.73 | -- | -- | 0.248 | -- | 31.2 | 870 | -- | -- |
| 249.65 | 0.74 | 3.25 | -- | 0.499 | 1.4 | -- | -- | -0.0104 | 12.5 | 34.75 | 762 | -- | -- |
| 248.72 | 0.737 | 3.28 | 0.978 | -- | -- | -- | -- | -0.0687 | -- | -- | -- | -- | -- |
| 270.81 | 0.77 | 3.29 | -- | 0.233 | -- | -- | -- | -0.179 | 9.04 | -- | -- | -- | -- |
| 249.77 | 0.736 | 3.27 | -- | -- | 1.18 | -- | -- | -0.0306 | -- | 37.98 | 738 | -- | -- |
| 273.94 | 0.773 | 3.3 | -- | -- | -- | -- | -- | -0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 193.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 8 | 194.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 12 | 194.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 17 | 194.84 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 32 | 195.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 52 | 195.45 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 119 | 196.17 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 145 | 196.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 18 |
| 157 | 196.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 164 | 196.41 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 252 | 196.87 | temperature | 15 | 1440 | > th | dose dependent | rect. | 14 | 17 |
| 254 | 196.88 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 277 | 196.95 | temperature | 15 | 1440 | > th | dose dependent | sin | 15 | NA |
| 545 | 197.61 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 581 | 197.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 586 | 197.69 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 6 |
| 727 | 197.94 | temperature | 25 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 732 | 197.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 23 |