Os07g0100300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0100300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.02 | 0.376 | 12.8 | -0.847 | 1.25 | -0.702 | 1.57 | 6.5 | -0.324 | 5.08 | 26.17 | 4820 | -- | -- |
| 72.53 | 0.4 | 12.9 | -2.35 | 1.19 | -0.372 | 1.3 | -- | -0.611 | 5.31 | 26.17 | 4820 | -- | -- |
| 69.63 | 0.389 | 12.8 | -0.857 | 1.29 | -0.75 | -- | 6.92 | -0.365 | 5.22 | 26.63 | 4518 | -- | -- |
| 75.82 | 0.408 | 12.9 | -2.32 | 1.15 | -0.526 | -- | -- | -0.598 | 5.59 | 25.43 | 23540 | -- | -- |
| 137.06 | 0.548 | 12.9 | -1.98 | -- | -1.44 | -- | 2.66 | -0.533 | -- | 26.63 | 4518 | -- | -- |
| 74.52 | 0.405 | 12.9 | -2.4 | 1.29 | -- | 1.49 | -- | -0.623 | 5.09 | -- | -- | -- | -- |
| 80.01 | 0.419 | 12.9 | -2.4 | 1.3 | -- | -- | -- | -0.629 | 5.21 | -- | -- | -- | -- |
| 130.65 | 0.535 | 12.9 | -2.19 | -- | -1.25 | -- | -- | -0.507 | -- | 24.99 | 7722 | -- | -- |
| 105.2 | 0.478 | 12.8 | -- | 1.31 | -1.82 | -- | -- | 0.182 | 5.11 | 9.496 | 46920 | -- | -- |
| 168.72 | 0.607 | 13 | -2.35 | -- | -- | -- | -- | -0.597 | -- | -- | -- | -- | -- |
| 231.63 | 0.712 | 12.9 | -- | 1.26 | -- | -- | -- | -0.362 | 5.28 | -- | -- | -- | -- |
| 194.42 | 0.649 | 12.8 | -- | -- | -1.8 | -- | -- | 0.197 | -- | 7.39 | 46582 | -- | -- |
| 314.74 | 0.828 | 12.9 | -- | -- | -- | -- | -- | -0.336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.97 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 2 | 60.98 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 3 | 61.21 | wind | 1 | 43200 | < th | dose dependent | rect. | 17 | 9 |
| 4 | 61.24 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 8 |
| 6 | 61.33 | wind | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 9 | 61.39 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 10 | 61.40 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 11 | 61.41 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 15 | 61.47 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 11 |
| 21 | 61.57 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 19 |
| 24 | 61.62 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 13 |
| 32 | 61.70 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 14 |
| 35 | 61.72 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 39 | 61.73 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 43 | 61.75 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 45 | 61.77 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 47 | 61.81 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 74 | 61.92 | humidity | 50 | 43200 | > th | dose independent | sin | 12 | NA |
| 75 | 61.92 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 76 | 61.92 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 88 | 62.21 | radiation | 10 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 93 | 62.31 | humidity | 50 | 43200 | < th | dose independent | sin | 12 | NA |
| 94 | 62.32 | wind | 1 | 43200 | < th | dose dependent | sin | 15 | NA |
| 95 | 62.34 | radiation | 40 | 43200 | > th | dose independent | sin | 14 | NA |
| 114 | 62.41 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 132 | 62.41 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 135 | 62.41 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 150 | 62.45 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 153 | 62.50 | radiation | 10 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 159 | 62.52 | radiation | 40 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 205 | 62.62 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 229 | 62.67 | radiation | 20 | 43200 | > th | dose independent | sin | 13 | NA |
| 292 | 62.75 | radiation | 40 | 43200 | < th | dose dependent | rect. | 12 | 16 |
| 367 | 62.80 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 374 | 62.81 | radiation | 10 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 465 | 62.87 | radiation | 10 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 466 | 62.87 | radiation | 30 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 501 | 62.89 | radiation | 30 | 43200 | < th | dose dependent | sin | 18 | NA |
| 529 | 62.90 | radiation | 20 | 43200 | < th | dose dependent | rect. | 14 | 21 |
| 573 | 62.93 | radiation | 10 | 43200 | > th | dose dependent | sin | 15 | NA |
| 574 | 62.93 | radiation | 10 | 43200 | < th | dose dependent | rect. | 24 | 10 |
| 608 | 62.95 | radiation | 10 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 699 | 63.03 | radiation | 20 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 730 | 63.05 | radiation | 20 | 43200 | < th | dose dependent | no | NA | NA |
| 939 | 63.10 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 942 | 63.10 | radiation | 10 | 43200 | < th | dose dependent | sin | 7 | NA |