Os06g0732000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribosomal protein L35.
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Os06g0732000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribosomal protein L35.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.79 | 0.609 | 4.15 | -0.314 | 0.144 | -0.889 | -0.276 | -2.93 | 0.522 | 6.45 | 68.97 | 7031 | -- | -- |
| 176.29 | 0.618 | 4.16 | -0.239 | 0.0634 | -1.05 | -0.233 | -- | 0.651 | 7.63 | 73 | 7478 | -- | -- |
| 167.35 | 0.603 | 4.16 | -0.291 | 0.106 | -0.908 | -- | -3.08 | 0.515 | 6.26 | 68 | 6806 | -- | -- |
| 174.63 | 0.615 | 4.1 | -0.204 | 0.121 | -1.11 | -- | -- | 0.827 | 10.3 | 74 | 7490 | -- | -- |
| 167.89 | 0.603 | 4.15 | -0.288 | -- | -0.902 | -- | -3.08 | 0.513 | -- | 68.03 | 6762 | -- | -- |
| 194.67 | 0.654 | 4.19 | -0.102 | 0.133 | -- | 0.338 | -- | 0.45 | 10.6 | -- | -- | -- | -- |
| 194.93 | 0.654 | 4.19 | -0.0905 | 0.149 | -- | -- | -- | 0.45 | 8.99 | -- | -- | -- | -- |
| 173.19 | 0.613 | 4.14 | 0.0196 | -- | -1.07 | -- | -- | 0.671 | -- | 75 | 3388 | -- | -- |
| 175.72 | 0.617 | 4.1 | -- | 0.126 | -1.07 | -- | -- | 0.824 | 10.8 | 74.12 | 7497 | -- | -- |
| 196.21 | 0.655 | 4.19 | -0.0907 | -- | -- | -- | -- | 0.45 | -- | -- | -- | -- | -- |
| 195.15 | 0.653 | 4.18 | -- | 0.149 | -- | -- | -- | 0.46 | 9.04 | -- | -- | -- | -- |
| 172.91 | 0.612 | 4.14 | -- | -- | -1.17 | -- | -- | 0.681 | -- | 76 | 3401 | -- | -- |
| 196.43 | 0.654 | 4.19 | -- | -- | -- | -- | -- | 0.461 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.34 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 7 |
| 3 | 169.55 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 4 | 169.62 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 9 | 4 |
| 7 | 169.73 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 10 | 170.00 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 13 | 170.13 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 13 | NA |
| 15 | 170.16 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 17 | 170.22 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 9 | 7 |
| 21 | 170.44 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 9 | 3 |
| 22 | 170.46 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 28 | 170.58 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 31 | 170.65 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 19 |
| 33 | 170.72 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 36 | 170.85 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 38 | 170.87 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 6 |
| 65 | 170.99 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 9 | 7 |
| 67 | 171.04 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 24 | 13 |
| 103 | 171.28 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 109 | 171.33 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 19 | 21 |
| 122 | 171.39 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 123 | 171.40 | humidity | 80.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 133 | 171.43 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 134 | 171.46 | humidity | 70.0 | 4320 | < th | dose independent | sin | 2 | NA |
| 136 | 171.46 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 11 |
| 158 | 171.53 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 24 | 16 |
| 173 | 171.57 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 9 | 11 |
| 186 | 171.57 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 20 |
| 220 | 171.69 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 226 | 171.72 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 15 |
| 242 | 171.75 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 288 | 171.93 | humidity | 80.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 289 | 171.93 | humidity | 60.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 298 | 171.96 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 14 | 23 |
| 300 | 171.96 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 314 | 172.03 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 6 | 4 |
| 333 | 172.06 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 336 | 172.07 | humidity | 70.0 | 4320 | > th | dose independent | sin | 3 | NA |
| 353 | 172.09 | humidity | 70.0 | 4320 | < th | dose independent | no | NA | NA |
| 439 | 172.16 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 19 | 18 |
| 450 | 172.18 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 459 | 172.22 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 464 | 172.24 | humidity | 70.0 | 14400 | < th | dose dependent | no | NA | NA |
| 465 | 172.24 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 7 | 14 |
| 536 | 172.27 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 597 | 172.34 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 679 | 172.44 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 704 | 172.49 | humidity | 60.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 769 | 172.57 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 771 | 172.57 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 813 | 172.60 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 9 | 15 |
| 895 | 172.61 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 9 | 11 |
| 929 | 172.65 | humidity | 60.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 944 | 172.67 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 952 | 172.68 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 968 | 172.69 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 15 | 1 |