Os06g0730300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF829, eukaryotic family protein.
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Os06g0730300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF829, eukaryotic family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.14 | 0.282 | 13 | -1.46 | 1.18 | -0.551 | 1.02 | 0.321 | -0.334 | 5.11 | 20.5 | 1055 | -- | -- |
| 36.44 | 0.281 | 13 | -1.51 | 1.18 | -0.564 | 1.12 | -- | -0.349 | 5.05 | 20.6 | 1065 | -- | -- |
| 38.72 | 0.29 | 13 | -1.44 | 1.2 | -0.547 | -- | 0.39 | -0.337 | 5.18 | 20.5 | 1065 | -- | -- |
| 39.14 | 0.291 | 13 | -1.52 | 1.18 | -0.583 | -- | -- | -0.353 | 5.18 | 20.5 | 1065 | -- | -- |
| 66.86 | 0.381 | 13 | -1.26 | -- | -0.915 | -- | 0.834 | -0.141 | -- | 26.37 | 301 | -- | -- |
| 45.52 | 0.316 | 13 | -1.76 | 1.17 | -- | 1.14 | -- | -0.481 | 5.28 | -- | -- | -- | -- |
| 48.72 | 0.327 | 13 | -1.76 | 1.18 | -- | -- | -- | -0.486 | 5.39 | -- | -- | -- | -- |
| 66.57 | 0.38 | 13 | -1.49 | -- | -0.882 | -- | -- | -0.213 | -- | 26.4 | 293 | -- | -- |
| 48.6 | 0.325 | 12.9 | -- | 1.18 | -1.44 | -- | -- | 0.0494 | 5.33 | 18.34 | 47520 | -- | -- |
| 120.75 | 0.513 | 13 | -1.72 | -- | -- | -- | -- | -0.457 | -- | -- | -- | -- | -- |
| 130.16 | 0.534 | 13 | -- | 1.15 | -- | -- | -- | -0.29 | 5.45 | -- | -- | -- | -- |
| 121.69 | 0.514 | 12.9 | -- | -- | -1.4 | -- | -- | 0.0645 | -- | 18.34 | 47520 | -- | -- |
| 198.61 | 0.658 | 13 | -- | -- | -- | -- | -- | -0.266 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 2 | 33.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 39 | 34.17 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 8 |
| 43 | 34.24 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 50 | 34.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 54 | 34.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 76 | 34.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 99 | 34.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 111 | 34.60 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 116 | 34.60 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 134 | 34.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 136 | 34.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 138 | 34.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 146 | 34.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 188 | 34.86 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 5 |
| 241 | 35.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 325 | 35.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 330 | 35.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 430 | 35.60 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 449 | 35.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 555 | 35.94 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 5 |
| 587 | 36.02 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 2 |
| 642 | 36.16 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 13 |
| 772 | 36.47 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 19 |
| 850 | 36.62 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 870 | 36.65 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 4 |
| 984 | 36.79 | temperature | 20 | 720 | > th | dose independent | sin | 4 | NA |