Os06g0729400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Gibberellin-regulated protein 2 precursor.
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Os06g0729400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Gibberellin-regulated protein 2 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.25 | 0.633 | 3.07 | 0.84 | 0.215 | 1.45 | -0.354 | 1.86 | 0.0891 | 18.1 | 26.7 | 10 | -- | -- |
| 186.49 | 0.641 | 3.03 | 1.16 | 0.201 | 1.41 | -0.826 | -- | 0.167 | 16.6 | 27.13 | 2 | -- | -- |
| 181.53 | 0.628 | 3.07 | 0.835 | 0.216 | 1.46 | -- | 1.93 | 0.0873 | 17.8 | 26.8 | 9 | -- | -- |
| 187.88 | 0.638 | 3.04 | 1.15 | 0.213 | 1.38 | -- | -- | 0.157 | 18 | 27.18 | 9 | -- | -- |
| 183.56 | 0.631 | 3.07 | 0.824 | -- | 1.43 | -- | 1.91 | 0.0704 | -- | 26 | 9 | -- | -- |
| 213.9 | 0.686 | 3.1 | 0.84 | 0.349 | -- | 0.612 | -- | -0.143 | 0.427 | -- | -- | -- | -- |
| 215.37 | 0.687 | 3.11 | 0.818 | 0.35 | -- | -- | -- | -0.145 | 23.9 | -- | -- | -- | -- |
| 189.98 | 0.642 | 3.04 | 1.13 | -- | 1.31 | -- | -- | 0.141 | -- | 26.75 | 9 | -- | -- |
| 219.18 | 0.693 | 3.09 | -- | 0.181 | 0.921 | -- | -- | -0.0582 | 21.4 | 26.63 | 2 | -- | -- |
| 223.09 | 0.698 | 3.1 | 0.829 | -- | -- | -- | -- | -0.141 | -- | -- | -- | -- | -- |
| 233.02 | 0.714 | 3.13 | -- | 0.361 | -- | -- | -- | -0.236 | 24 | -- | -- | -- | -- |
| 221 | 0.695 | 3.08 | -- | -- | 0.983 | -- | -- | -0.0478 | -- | 26.84 | 2 | -- | -- |
| 241.21 | 0.725 | 3.12 | -- | -- | -- | -- | -- | -0.233 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 17 |
| 4 | 179.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 5 | 179.88 | temperature | 25 | 30 | < th | dose dependent | rect. | 12 | 21 |
| 14 | 180.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 17 |
| 15 | 180.24 | temperature | 10 | 720 | > th | dose dependent | sin | 16 | NA |
| 16 | 180.24 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 18 |
| 55 | 180.91 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 100 | 181.35 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 141 | 181.88 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 146 | 181.97 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 167 | 182.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 169 | 182.19 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 170 | 182.20 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 186 | 182.35 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 187 | 182.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 188 | 182.42 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 196 | 182.50 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 296 | 183.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 299 | 183.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 19 |
| 345 | 183.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 350 | 183.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 22 |
| 359 | 183.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 14 |
| 361 | 183.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 20 |
| 362 | 183.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 430 | 183.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 438 | 183.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 19 |
| 440 | 183.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 442 | 183.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 458 | 183.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 461 | 183.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 22 |
| 475 | 183.90 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 484 | 183.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 535 | 183.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 606 | 184.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 661 | 184.11 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 677 | 184.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 703 | 184.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 720 | 184.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 767 | 184.19 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 800 | 184.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 842 | 184.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 20 |
| 851 | 184.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 862 | 184.27 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |
| 904 | 184.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 16 |
| 974 | 184.37 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |