Os06g0728800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0728800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.01 | 0.339 | 9.36 | 0.288 | 0.701 | 0.85 | 0.161 | -0.742 | -0.307 | 15.9 | 10.22 | 275 | -- | -- |
| 52.92 | 0.339 | 9.35 | 0.305 | 0.705 | 0.841 | -0.464 | -- | -0.287 | 15.7 | 10.43 | 285 | -- | -- |
| 52.03 | 0.336 | 9.36 | 0.293 | 0.696 | 0.856 | -- | -0.641 | -0.304 | 15.9 | 10.22 | 278 | -- | -- |
| 53.48 | 0.341 | 9.35 | 0.314 | 0.693 | 0.845 | -- | -- | -0.295 | 15.8 | 10.44 | 285 | -- | -- |
| 58.82 | 0.357 | 9.38 | 0.222 | -- | 1.45 | -- | -1.09 | -0.46 | -- | 10.01 | 357 | -- | -- |
| 65.6 | 0.38 | 9.33 | 0.453 | 1.44 | -- | -0.301 | -- | -0.207 | 15.1 | -- | -- | -- | -- |
| 65.9 | 0.38 | 9.33 | 0.446 | 1.44 | -- | -- | -- | -0.209 | 15.1 | -- | -- | -- | -- |
| 59.21 | 0.358 | 9.37 | 0.22 | -- | 1.46 | -- | -- | -0.382 | -- | 10 | 360 | -- | -- |
| 55.97 | 0.348 | 9.36 | -- | 0.639 | 0.907 | -- | -- | -0.328 | 16 | 10.22 | 278 | -- | -- |
| 183.69 | 0.633 | 9.34 | 0.385 | -- | -- | -- | -- | -0.247 | -- | -- | -- | -- | -- |
| 71.15 | 0.395 | 9.34 | -- | 1.43 | -- | -- | -- | -0.259 | 15.1 | -- | -- | -- | -- |
| 60.5 | 0.362 | 9.37 | -- | -- | 1.47 | -- | -- | -0.399 | -- | 10.01 | 360 | -- | -- |
| 187.6 | 0.639 | 9.35 | -- | -- | -- | -- | -- | -0.289 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.84 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 11 |
| 14 | 52.06 | radiation | 10 | 270 | > th | dose independent | no | NA | NA |
| 93 | 52.11 | radiation | 10 | 270 | > th | dose independent | rect. | 8 | 23 |
| 108 | 52.48 | radiation | 10 | 270 | > th | dose independent | sin | 0 | NA |
| 109 | 52.54 | radiation | 10 | 270 | > th | dose independent | rect. | 12 | 23 |
| 110 | 52.65 | radiation | 20 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 114 | 52.89 | radiation | 20 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 143 | 52.96 | radiation | 10 | 270 | > th | dose independent | rect. | 14 | 23 |
| 146 | 53.17 | radiation | 10 | 720 | > th | dose independent | rect. | 8 | 2 |
| 154 | 53.38 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 157 | 53.42 | radiation | 20 | 270 | < th | dose dependent | no | NA | NA |
| 159 | 53.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 164 | 53.59 | radiation | 20 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 171 | 53.81 | radiation | 1 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 173 | 53.89 | radiation | 20 | 270 | < th | dose dependent | rect. | 5 | 11 |
| 182 | 53.98 | radiation | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 188 | 54.07 | radiation | 20 | 270 | < th | dose dependent | sin | 23 | NA |
| 203 | 54.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 327 | 54.48 | radiation | 20 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 329 | 54.50 | radiation | 10 | 270 | < th | dose independent | rect. | 4 | 23 |
| 396 | 54.79 | radiation | 10 | 720 | > th | dose independent | rect. | 7 | 6 |
| 403 | 54.87 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 13 |
| 414 | 54.88 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 528 | 55.02 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 576 | 55.15 | radiation | 20 | 270 | < th | dose independent | rect. | 17 | 23 |
| 589 | 55.27 | radiation | 10 | 270 | < th | dose independent | rect. | 12 | 22 |
| 596 | 55.29 | humidity | 90 | 1440 | > th | dose dependent | rect. | 12 | 12 |
| 600 | 55.31 | radiation | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 616 | 55.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 16 |
| 643 | 55.46 | radiation | 10 | 720 | > th | dose independent | sin | 7 | NA |
| 719 | 55.57 | radiation | 1 | 270 | > th | dose dependent | sin | 0 | NA |
| 723 | 55.58 | radiation | 10 | 270 | < th | dose independent | no | NA | NA |
| 763 | 55.66 | radiation | 10 | 270 | < th | dose independent | rect. | 15 | 23 |
| 772 | 55.69 | radiation | 10 | 270 | < th | dose independent | rect. | 5 | 11 |
| 777 | 55.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 812 | 55.74 | radiation | 10 | 270 | < th | dose independent | sin | 23 | NA |
| 821 | 55.76 | radiation | 20 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 823 | 55.77 | radiation | 20 | 720 | < th | dose dependent | rect. | 8 | 4 |
| 852 | 55.84 | radiation | 10 | 270 | < th | dose independent | rect. | 9 | 23 |