Os06g0727400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase APK1A, chloroplast precursor (EC 2.7.1.-).
FiT-DB / Search/ Help/ Sample detail
|
Os06g0727400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Protein kinase APK1A, chloroplast precursor (EC 2.7.1.-).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.82 | 0.234 | 11.1 | 1.25 | 0.118 | 0.172 | -0.241 | -2.16 | 0.313 | 18.8 | 18.13 | 34337 | -- | -- |
| 31.44 | 0.263 | 11.1 | 1.15 | 0.113 | 0.154 | -0.35 | -- | 0.248 | 16.3 | 60 | 47520 | -- | -- |
| 24.92 | 0.232 | 11.1 | 1.23 | 0.107 | 0.165 | -- | -2.11 | 0.3 | 19.6 | 19.53 | 34307 | -- | -- |
| 31.69 | 0.264 | 11.1 | 1.14 | 0.111 | 0.147 | -- | -- | 0.246 | 16.8 | 107.2 | 47520 | -- | -- |
| 25.65 | 0.236 | 11.1 | 1.22 | -- | 0.162 | -- | -2.1 | 0.294 | -- | 22.99 | 34342 | -- | -- |
| 31.94 | 0.265 | 11.1 | 1.14 | 0.11 | -- | -0.205 | -- | 0.248 | 18.6 | -- | -- | -- | -- |
| 31.99 | 0.265 | 11.1 | 1.14 | 0.113 | -- | -- | -- | 0.247 | 19.7 | -- | -- | -- | -- |
| 32.29 | 0.266 | 11.1 | 1.14 | -- | 0.108 | -- | -- | 0.244 | -- | 107.2 | 47520 | -- | -- |
| 58.37 | 0.356 | 11.1 | -- | 0.111 | 0.572 | -- | -- | 0.123 | 20 | 90.9 | 47520 | -- | -- |
| 32.68 | 0.267 | 11.1 | 1.14 | -- | -- | -- | -- | 0.245 | -- | -- | -- | -- | -- |
| 66.33 | 0.381 | 11.1 | -- | 0.106 | -- | -- | -- | 0.12 | 20.4 | -- | -- | -- | -- |
| 59.04 | 0.358 | 11.1 | -- | -- | 0.57 | -- | -- | 0.122 | -- | 91.08 | 47520 | -- | -- |
| 66.96 | 0.382 | 11.1 | -- | -- | -- | -- | -- | 0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.60 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 3 | 23.75 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 4 | 23.83 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 6 | 23.94 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 8 | 23.96 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 9 | 23.96 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 10 | 23.99 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 14 | 24.06 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 7 |
| 21 | 24.13 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 22 | 24.14 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 39 | 24.21 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 62 | 24.25 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 140 | 24.33 | atmosphere | 1000 | 14400 | > th | dose dependent | sin | 15 | NA |
| 231 | 24.40 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 246 | 24.41 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 336 | 24.47 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 372 | 24.49 | atmosphere | 1000 | 14400 | > th | dose dependent | no | NA | NA |
| 383 | 24.49 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 403 | 24.50 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 406 | 24.50 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 22 | 23 |
| 409 | 24.51 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 429 | 24.51 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 455 | 24.53 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 19 | NA |
| 601 | 24.63 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 613 | 24.64 | humidity | 70 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 615 | 24.64 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 675 | 24.67 | humidity | 70 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 706 | 24.68 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 18 | NA |
| 796 | 24.71 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 882 | 24.74 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 977 | 24.77 | atmosphere | 1015 | 14400 | < th | dose dependent | sin | 15 | NA |