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Os06g0726400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Branching enzyme-I precursor (Starch-branching enzyme I) (1,4-alpha- glucan branching enzyme I).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.018) R2 : 0.394
β1 : -1.12 (0.0661) R2dD : 0.398 R2D : 0.331
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.23 (0.0385) R2dN8 : 0.0635 R2N8 : -0.00407
σ : 0.339
deviance : 52.55
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.5 0.288 11 -1.61 0.315 -0.329 -0.505 2.16 -0.402 11.9 24.43 717 -- --
43.42 0.307 11 -1.34 0.313 -0.473 -0.0526 -- -0.341 12.2 70.8 6961 -- --
38.36 0.288 11 -1.59 0.332 -0.375 -- 2.06 -0.393 11.8 24.4 589 -- --
41.44 0.302 11 -1.23 0.263 -1.35 -- -- -0.259 12.2 17.81 6985 -- --
40.7 0.297 11 -1.59 -- -0.747 -- 2.39 -0.419 -- 80.41 14 -- --
47.84 0.324 11 -1.11 0.272 -- -0.11 -- -0.225 12.3 -- -- -- --
47.89 0.324 11 -1.11 0.272 -- -- -- -0.226 12.2 -- -- -- --
42.48 0.304 11 -1.43 -- -1.42 -- -- -0.316 -- 15.92 6206 -- --
61.29 0.365 10.9 -- 0.261 0.708 -- -- 0.109 12.2 87.86 47520 -- --
52.55 0.339 11 -1.12 -- -- -- -- -0.23 -- -- -- -- --
80.62 0.42 10.9 -- 0.288 -- -- -- -0.102 12.4 -- -- -- --
65.58 0.377 10.9 -- -- 0.723 -- -- 0.111 -- 99.25 47520 -- --
85.83 0.432 10.9 -- -- -- -- -- -0.106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.13 humidity 80 1440 > th dose dependent rect. 9 5
9 35.87 humidity 50 43200 > th dose independent rect. 14 3
10 35.99 humidity 50 43200 < th dose independent rect. 14 4
11 36.01 wind 9 43200 > th dose dependent rect. 17 4
13 36.04 humidity 60 43200 < th dose dependent rect. 13 2
16 36.12 humidity 50 43200 < th dose independent rect. 14 7
17 36.14 humidity 70 43200 < th dose dependent rect. 9 1
27 36.17 humidity 60 43200 < th dose dependent rect. 11 6
28 36.20 humidity 60 43200 < th dose dependent rect. 12 4
31 36.21 humidity 60 43200 < th dose dependent rect. 5 12
34 36.22 wind 9 43200 > th dose dependent rect. 17 6
58 36.29 humidity 60 43200 < th dose dependent rect. 23 18
69 36.32 humidity 60 43200 < th dose dependent sin 22 NA
117 36.39 humidity 60 43200 > th dose independent rect. 9 1
118 36.39 humidity 50 43200 > th dose independent rect. 14 11
163 36.41 humidity 60 43200 < th dose dependent rect. 11 20
168 36.41 humidity 60 43200 < th dose dependent rect. 11 23
199 36.43 humidity 60 43200 < th dose dependent rect. 9 22
221 36.45 humidity 70 43200 < th dose dependent rect. 6 4
241 36.46 humidity 60 43200 < th dose dependent no NA NA
260 36.48 humidity 50 43200 > th dose independent rect. 13 18
275 36.49 humidity 60 43200 < th dose dependent rect. 13 23
276 36.50 humidity 50 43200 < th dose independent sin 15 NA
286 36.52 humidity 90 1440 < th dose independent rect. 9 5
297 36.54 humidity 50 43200 > th dose independent sin 16 NA
329 36.59 humidity 50 43200 > th dose independent rect. 15 1
344 36.64 humidity 50 43200 < th dose independent rect. 15 1
373 36.72 humidity 60 43200 > th dose independent rect. 5 5
462 36.92 humidity 60 43200 < th dose independent rect. 9 1
510 36.96 temperature 25 720 < th dose dependent rect. 23 20
524 36.99 humidity 60 43200 < th dose independent rect. 5 6
529 36.99 humidity 50 43200 > th dose independent rect. 4 16
533 36.99 humidity 60 43200 < th dose independent rect. 16 19
546 37.00 humidity 50 43200 > th dose independent rect. 4 14
572 37.01 humidity 50 43200 > th dose independent rect. 23 19
590 37.01 humidity 50 43200 > th dose independent rect. 19 23
594 37.02 humidity 50 43200 > th dose independent no NA NA
595 37.02 wind 7 43200 > th dose independent rect. 20 1
611 37.02 humidity 50 43200 < th dose independent rect. 4 17
617 37.02 humidity 60 43200 > th dose independent rect. 16 19
670 37.03 humidity 50 43200 < th dose independent rect. 20 22
679 37.04 humidity 50 43200 < th dose independent no NA NA
680 37.04 humidity 90 1440 < th dose independent rect. 9 2
739 37.06 radiation 1 4320 > th dose independent rect. 4 1
753 37.06 humidity 50 43200 < th dose independent rect. 4 14
768 37.06 radiation 1 4320 > th dose dependent rect. 4 1
783 37.07 wind 9 43200 < th dose independent rect. 17 4
843 37.09 wind 7 43200 < th dose independent rect. 20 1
854 37.09 humidity 70 43200 < th dose dependent rect. 4 3
871 37.11 temperature 15 14400 > th dose independent rect. 7 1
880 37.12 humidity 60 43200 < th dose independent rect. 5 2
909 37.14 temperature 10 720 > th dose dependent rect. 19 21
929 37.17 wind 9 43200 > th dose independent rect. 17 7
938 37.18 wind 9 43200 > th dose independent rect. 17 11
967 37.22 wind 9 43200 < th dose independent rect. 17 11
992 37.25 wind 9 43200 < th dose independent rect. 17 7