Os06g0726200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Endochitinase precursor (EC 3.2.1.14).
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Os06g0726200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Endochitinase precursor (EC 3.2.1.14).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.65 | 0.541 | 10.7 | 1.68 | 0.742 | 1.08 | 1.09 | -1.7 | 0.0764 | 1.6 | 24.12 | 1342 | -- | -- |
| 136.77 | 0.545 | 10.8 | 1.21 | 0.757 | 0.896 | 1.32 | -- | -0.125 | 1.04 | 23.6 | 1137 | -- | -- |
| 135.85 | 0.543 | 10.7 | 1.63 | 0.79 | 1 | -- | -1.67 | 0.0886 | 1.24 | 23.9 | 1121 | -- | -- |
| 139.88 | 0.551 | 10.8 | 1.02 | 0.798 | 0.913 | -- | -- | -0.0706 | 0.812 | 23.7 | 814 | -- | -- |
| 164.69 | 0.598 | 10.7 | 1.61 | -- | 1.01 | -- | -1.38 | 0.105 | -- | 23.7 | 1631 | -- | -- |
| 175.82 | 0.622 | 10.9 | 0.697 | 0.63 | -- | 1.16 | -- | -0.484 | 1.38 | -- | -- | -- | -- |
| 181.28 | 0.631 | 10.9 | 0.657 | 0.63 | -- | -- | -- | -0.49 | 1.42 | -- | -- | -- | -- |
| 168.31 | 0.604 | 10.8 | 1.08 | -- | 0.953 | -- | -- | -0.0339 | -- | 23.4 | 1635 | -- | -- |
| 164.53 | 0.597 | 10.8 | -- | 0.757 | 0.727 | -- | -- | -0.278 | 0.906 | 23.35 | 750 | -- | -- |
| 205.66 | 0.67 | 10.9 | 0.682 | -- | -- | -- | -- | -0.477 | -- | -- | -- | -- | -- |
| 192.67 | 0.649 | 10.9 | -- | 0.641 | -- | -- | -- | -0.564 | 1.46 | -- | -- | -- | -- |
| 191.43 | 0.647 | 10.8 | -- | -- | 0.57 | -- | -- | -0.346 | -- | 23.6 | 1636 | -- | -- |
| 217.93 | 0.689 | 10.9 | -- | -- | -- | -- | -- | -0.553 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 118.66 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 20 |
| 3 | 118.71 | wind | 5 | 14400 | > th | dose independent | rect. | 5 | 17 |
| 10 | 119.10 | wind | 5 | 14400 | > th | dose independent | rect. | 8 | 14 |
| 26 | 119.33 | wind | 5 | 14400 | > th | dose independent | rect. | 5 | 20 |
| 36 | 119.52 | wind | 5 | 14400 | < th | dose independent | rect. | 5 | 17 |
| 39 | 119.53 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 20 |
| 68 | 119.83 | wind | 5 | 14400 | > th | dose independent | rect. | 24 | 22 |
| 84 | 120.04 | wind | 5 | 14400 | > th | dose independent | sin | 19 | NA |
| 94 | 120.12 | wind | 5 | 14400 | < th | dose independent | rect. | 5 | 20 |
| 128 | 120.42 | wind | 5 | 14400 | < th | dose independent | rect. | 24 | 22 |
| 154 | 120.62 | wind | 5 | 14400 | > th | dose dependent | rect. | 13 | 9 |
| 191 | 120.93 | wind | 5 | 14400 | > th | dose independent | no | NA | NA |
| 194 | 120.93 | wind | 5 | 14400 | > th | dose dependent | rect. | 13 | 12 |
| 213 | 121.14 | wind | 5 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 222 | 121.19 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 23 |
| 225 | 121.24 | wind | 5 | 14400 | > th | dose dependent | rect. | 11 | 14 |
| 233 | 121.30 | wind | 5 | 14400 | > th | dose dependent | sin | 18 | NA |
| 244 | 121.45 | wind | 5 | 14400 | < th | dose independent | sin | 21 | NA |
| 251 | 121.53 | wind | 5 | 14400 | < th | dose independent | no | NA | NA |
| 263 | 121.60 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 275 | 121.73 | wind | 5 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 281 | 121.80 | wind | 5 | 14400 | > th | dose dependent | rect. | 9 | 13 |
| 289 | 121.88 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 311 | 122.02 | wind | 5 | 14400 | > th | dose dependent | rect. | 5 | 17 |
| 314 | 122.08 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 379 | 122.60 | wind | 5 | 14400 | > th | dose dependent | rect. | 5 | 20 |
| 380 | 122.62 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 420 | 122.88 | wind | 3 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 489 | 123.45 | wind | 5 | 14400 | > th | dose dependent | rect. | 24 | 21 |
| 524 | 123.64 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 553 | 123.84 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 622 | 124.35 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 3 |
| 627 | 124.45 | wind | 5 | 14400 | > th | dose dependent | no | NA | NA |
| 635 | 124.49 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 636 | 124.49 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 652 | 124.55 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 667 | 124.65 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 677 | 124.73 | wind | 5 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 722 | 125.12 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 749 | 125.25 | wind | 5 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 846 | 125.81 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 881 | 126.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 899 | 126.11 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 956 | 126.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |