Os06g0726100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0726100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Seed chitinase-c.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.64	(0.0676)	R²	:	0.348
β₁	:	1.11	(0.257)	R²_dD	:	0.0296	R²_D	:	-0.0195
β₂	:	1.37	(0.17)	R²_dC	:	0.096	R²_C	:	0.0613
β₃	:	-2.86	(0.204)	R²_dE	:	0.31	R²_E	:	0.219
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.183	(0.146)	R²_dN8	:	0.00305	R²_N8	:	-0.00574
σ	:	1.26
deviance	:	733.78
__

_____

C
peak time of C	:	3.31
E
wheather	:	temperature
threshold	:	22.8
memory length	:	1421
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	15.4
open length of G	:	1.25

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
727.61	1.27	5.57	1.73	1.36	-3.02	0.549	2.27	0.314	3.28	23.19	1423	15.4	1.2
732.35	1.26	5.64	1.17	1.37	-2.91	0.796	--	0.207	3.22	22.8	1420	15.4	1.23
728.35	1.26	5.56	1.73	1.37	-3.01	--	2.34	0.326	3.26	22.95	1422	15.4	1.22
733.78	1.26	5.64	1.11	1.37	-2.86	--	--	0.183	3.31	22.8	1421	15.4	1.25
827.67	1.34	5.57	1.78	--	-2.9	--	2.42	0.327	--	22.9	1450	15.4	1.2
1049.59	1.52	5.71	0.134	1.14	--	0.186	--	-0.136	3.43	--	--	--	--
1049.69	1.52	5.71	0.13	1.14	--	--	--	-0.137	3.45	--	--	--	--
809.5	1.33	5.65	1.01	--	-3.71	--	--	0.143	--	23.57	1640	15.1	2.18
763.26	1.29	5.67	--	1.4	-2.59	--	--	0.0438	3.28	23.24	1418	15.4	1.31
1122.98	1.57	5.71	0.179	--	--	--	--	-0.107	--	--	--	--	--
1050.14	1.52	5.71	--	1.15	--	--	--	-0.151	3.45	--	--	--	--
835.11	1.35	5.67	--	--	-3.5	--	--	0.0496	--	23.13	1632	15.3	2.18
1123.82	1.56	5.71	--	--	--	--	--	-0.127	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	738.16	temperature	25	1440	> th	dose dependent	rect.	15	1
61	749.95	temperature	25	1440	> th	dose dependent	rect.	13	13
97	752.57	humidity	50	1440	> th	dose dependent	rect.	13	8
100	752.64	humidity	50	1440	> th	dose dependent	rect.	11	10
118	753.81	humidity	90	1440	< th	dose dependent	rect.	15	6
128	754.49	humidity	90	1440	< th	dose dependent	rect.	13	8
143	755.49	temperature	25	1440	> th	dose dependent	sin	17	NA
161	756.18	humidity	90	1440	< th	dose dependent	rect.	11	10
219	758.81	humidity	80	1440	< th	dose dependent	rect.	13	19
231	759.19	humidity	80	1440	< th	dose dependent	sin	17	NA
286	761.34	humidity	80	1440	< th	dose dependent	rect.	11	21
339	762.79	temperature	25	1440	> th	dose dependent	rect.	24	19
432	764.44	humidity	50	1440	> th	dose dependent	sin	20	NA
475	765.12	temperature	25	1440	> th	dose dependent	no	NA	NA
541	766.40	humidity	80	1440	< th	dose dependent	rect.	7	14
564	767.21	humidity	70	1440	> th	dose independent	sin	14	NA
644	768.56	wind	5	43200	> th	dose independent	rect.	20	1
647	768.59	radiation	30	1440	> th	dose independent	rect.	15	17
654	768.73	radiation	30	1440	< th	dose independent	rect.	15	17
688	769.20	humidity	80	1440	< th	dose dependent	rect.	18	2
709	769.44	humidity	80	1440	< th	dose dependent	no	NA	NA
760	770.63	radiation	1	1440	< th	dose independent	rect.	10	20
764	770.88	wind	5	43200	< th	dose independent	rect.	20	1
765	770.88	humidity	80	1440	< th	dose dependent	rect.	15	23
777	771.25	radiation	30	1440	< th	dose independent	rect.	15	1
810	772.16	humidity	70	1440	> th	dose independent	rect.	13	19
826	772.57	humidity	80	1440	< th	dose dependent	rect.	18	23
861	773.21	humidity	70	1440	> th	dose independent	rect.	13	16
863	773.23	humidity	70	1440	> th	dose independent	rect.	13	14
864	773.25	humidity	70	1440	> th	dose independent	rect.	13	11
866	773.27	humidity	70	1440	> th	dose independent	rect.	13	9
877	773.34	humidity	70	1440	> th	dose independent	rect.	13	7
885	773.42	radiation	20	1440	> th	dose dependent	rect.	15	17
908	773.98	humidity	70	1440	< th	dose independent	sin	15	NA
917	774.28	radiation	30	1440	> th	dose independent	rect.	15	1
935	774.65	radiation	30	1440	< th	dose independent	rect.	15	9
944	774.97	radiation	1	1440	< th	dose dependent	rect.	9	21
955	775.24	radiation	30	1440	< th	dose independent	rect.	15	14
959	775.33	radiation	30	1440	< th	dose independent	rect.	15	12