FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0725700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF241, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0551) R2 : 0.0883
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.984 (0.192) R2dC : 0.0855 R2C : -0.0639
β3 : -0.941 (0.161) R2dE : 0.126 R2E : -0.0118
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.29 (0.116) R2dN8 : 0.0188 R2N8 : 0.0211
σ : 1.03
deviance : 486.87
__
_____
C
peak time of C : 6.32
E
wheather : temperature
threshold : 19.93
memory length : 264
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.8
open length of G : 16.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
469.63 1.02 3.39 0.318 1.01 -1.04 1.23 -1.72 -0.33 6.61 19.8 269 18.9 17
480.48 1.02 3.35 0.522 1.03 -0.983 0.591 -- -0.305 6.53 19.8 257 19 16.9
472.31 1.01 3.38 0.374 0.983 -1.02 -- -1.35 -0.321 6.61 19.94 265 18.8 17.2
479.87 1.02 3.36 0.48 1.01 -1 -- -- -0.284 6.4 19.95 265 18.9 16.9
492.4 1.03 3.41 0.304 -- -1.2 -- -1.77 -0.263 -- 20 1056 18.6 19
517.06 1.07 3.39 0.278 0.19 -- 0.29 -- -0.366 7.79 -- -- -- --
517.3 1.07 3.39 0.285 0.191 -- -- -- -0.366 7.59 -- -- -- --
498.56 1.04 3.36 0.622 -- -0.991 -- -- -0.203 -- 20.05 1077 18.1 19.5
486.87 1.03 3.35 -- 0.984 -0.941 -- -- -0.29 6.32 19.93 264 18.8 16.9
519.25 1.06 3.4 0.288 -- -- -- -- -0.363 -- -- -- -- --
519.44 1.07 3.4 -- 0.193 -- -- -- -0.398 7.49 -- -- -- --
505.98 1.05 3.38 -- -- -0.491 -- -- -0.329 -- 20 243 17.6 18.7
521.44 1.07 3.4 -- -- -- -- -- -0.395 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 471.33 temperature 20.0 270 > th dose independent rect. 19 17
4 473.97 temperature 10.0 270 > th dose dependent rect. 19 17
16 476.08 temperature 30.0 270 < th dose dependent rect. 23 9
29 478.08 humidity 90.0 270 < th dose dependent rect. 3 2
34 478.41 humidity 80.0 90 < th dose dependent rect. 5 2
37 478.60 humidity 80.0 90 < th dose independent rect. 5 2
38 478.78 humidity 90.0 90 < th dose independent rect. 9 6
44 479.26 humidity 80.0 270 < th dose independent rect. 2 4
46 479.33 humidity 80.0 270 < th dose independent rect. 3 2
86 480.87 temperature 20.0 270 > th dose independent rect. 8 14
120 482.30 humidity 80.0 10 < th dose independent rect. 3 5
129 482.81 radiation 10.0 270 > th dose independent rect. 7 6
165 483.50 wind 3.0 10 > th dose independent rect. 1 6
195 484.23 temperature 20.0 270 < th dose independent rect. 2 20
198 484.25 radiation 20.0 30 < th dose independent rect. 14 20
200 484.27 atmosphere 1000.0 90 > th dose independent rect. 14 19
211 484.50 atmosphere 1000.0 10 > th dose independent rect. 15 19
215 484.56 wind 3.0 10 > th dose independent rect. 2 4
218 484.62 temperature 10.0 270 > th dose dependent rect. 18 9
239 485.11 humidity 80.0 1440 < th dose independent rect. 21 12
276 485.40 wind 3.0 10 > th dose dependent rect. 1 6
307 485.99 atmosphere 995.0 270 > th dose dependent rect. 24 8
308 486.00 radiation 40.0 1440 < th dose independent rect. 16 5
315 486.10 humidity 80.0 1440 < th dose independent rect. 2 6
331 486.27 temperature 20.0 270 > th dose independent rect. 3 10
333 486.32 wind 1.0 270 > th dose independent rect. 12 20
346 486.50 temperature 20.0 720 < th dose independent rect. 19 4
347 486.51 humidity 80.0 1440 > th dose independent rect. 2 6
353 486.56 temperature 20.0 270 < th dose dependent rect. 2 20
365 486.71 humidity 90.0 10 < th dose independent rect. 5 1
367 486.72 atmosphere 1000.0 270 > th dose independent rect. 24 8
368 486.72 wind 1.0 10 > th dose dependent rect. 1 8
373 486.80 humidity 80.0 10 < th dose dependent rect. 4 2
376 486.84 wind 7.0 720 > th dose dependent rect. 20 1
397 486.99 wind 7.0 720 > th dose independent rect. 20 1
408 487.21 temperature 10.0 90 > th dose dependent rect. 9 6
412 487.27 temperature 20.0 720 > th dose independent rect. 16 6
413 487.29 wind 7.0 90 < th dose independent rect. 14 19
428 487.42 wind 5.0 270 < th dose independent rect. 15 1
434 487.52 atmosphere 1000.0 270 > th dose independent rect. 12 20
436 487.54 wind 3.0 1440 > th dose independent rect. 10 1
445 487.65 humidity 80.0 720 < th dose independent sin 9 NA
446 487.67 wind 9.0 270 < th dose dependent rect. 15 1
447 487.68 temperature 30.0 90 < th dose dependent rect. 14 19
448 487.70 wind 3.0 1440 < th dose independent rect. 10 1
453 487.74 radiation 40.0 30 < th dose dependent rect. 14 19
455 487.76 humidity 80.0 10 < th dose independent rect. 22 10
471 487.88 humidity 80.0 1440 > th dose independent rect. 23 9
473 487.90 temperature 20.0 270 > th dose independent rect. 18 10
486 487.99 wind 5.0 270 < th dose independent rect. 18 9
504 488.23 wind 7.0 270 < th dose independent rect. 12 20
510 488.26 temperature 30.0 270 < th dose dependent rect. 12 20
513 488.29 radiation 20.0 30 < th dose independent rect. 12 22
517 488.33 temperature 20.0 270 > th dose independent rect. 5 22
523 488.35 wind 5.0 270 < th dose independent rect. 19 17
538 488.44 radiation 10.0 270 < th dose independent rect. 1 16
560 488.64 radiation 10.0 270 > th dose independent rect. 11 1
562 488.65 radiation 20.0 30 < th dose independent rect. 7 13
568 488.69 atmosphere 995.0 270 > th dose independent rect. 12 7
570 488.70 temperature 15.0 90 > th dose independent rect. 14 19
575 488.72 temperature 15.0 90 > th dose independent rect. 9 5
594 488.78 temperature 20.0 270 > th dose independent rect. 3 22
605 488.87 radiation 10.0 270 < th dose independent sin 5 NA
618 488.92 atmosphere 1000.0 10 > th dose independent rect. 1 9
629 489.00 wind 7.0 270 < th dose independent rect. 11 22
636 489.04 wind 1.0 270 > th dose independent rect. 24 8
637 489.04 humidity 80.0 1440 > th dose independent rect. 21 12
642 489.06 radiation 10.0 270 < th dose dependent sin 3 NA
644 489.08 radiation 10.0 10 > th dose independent rect. 10 5
658 489.16 precipitation 0.1 90 < th dose independent rect. 9 5
660 489.16 radiation 40.0 90 < th dose independent rect. 14 19
661 489.16 temperature 25.0 10 < th dose independent rect. 1 21
662 489.16 precipitation 0.1 90 < th dose dependent rect. 9 5
663 489.17 wind 5.0 270 < th dose independent rect. 14 3
666 489.17 temperature 10.0 270 > th dose dependent rect. 7 6
684 489.28 wind 9.0 90 < th dose independent rect. 9 5
710 489.38 wind 9.0 270 < th dose dependent rect. 19 17
711 489.40 temperature 20.0 270 < th dose independent rect. 2 5
718 489.42 atmosphere 995.0 90 > th dose independent rect. 9 5
719 489.42 atmosphere 1015.0 90 < th dose independent rect. 9 5
729 489.47 precipitation 0.1 270 < th dose independent rect. 23 9
731 489.47 precipitation 0.1 270 < th dose dependent rect. 23 9
738 489.51 wind 7.0 270 < th dose independent rect. 12 7
740 489.51 temperature 15.0 270 > th dose independent rect. 12 20
751 489.56 temperature 15.0 270 > th dose independent rect. 9 2
753 489.57 temperature 20.0 720 < th dose independent rect. 5 18
761 489.62 radiation 10.0 270 > th dose independent sin 5 NA
771 489.64 atmosphere 995.0 10 > th dose dependent rect. 2 8
812 489.78 wind 5.0 1440 < th dose dependent rect. 10 1
814 489.79 humidity 80.0 90 < th dose independent rect. 15 17
817 489.80 precipitation 0.1 270 < th dose independent rect. 8 15
819 489.80 precipitation 0.1 270 < th dose dependent rect. 8 15
838 489.89 temperature 20.0 720 < th dose independent rect. 12 11
841 489.89 temperature 15.0 270 > th dose independent rect. 11 22
848 489.92 wind 1.0 270 > th dose independent rect. 12 7
906 490.13 atmosphere 995.0 90 > th dose independent rect. 14 7
915 490.15 atmosphere 1000.0 10 > th dose independent rect. 12 22
920 490.16 temperature 25.0 270 < th dose independent rect. 23 9
926 490.17 humidity 80.0 720 < th dose dependent rect. 21 9
928 490.18 wind 7.0 270 < th dose independent rect. 9 2
945 490.24 radiation 20.0 270 < th dose independent rect. 23 9
968 490.32 wind 9.0 270 < th dose dependent rect. 14 3
971 490.34 precipitation 0.1 270 < th dose independent rect. 9 2
974 490.34 precipitation 0.1 270 < th dose dependent rect. 9 2
980 490.37 atmosphere 995.0 270 > th dose independent rect. 9 2
981 490.37 atmosphere 1015.0 270 < th dose independent rect. 9 2