Os06g0725400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to BLE1 protein.
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Os06g0725400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to BLE1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.84 | 0.338 | 10.6 | -0.967 | 0.52 | -0.547 | 0.537 | 0.36 | -0.252 | 19 | 1011 | 19308 | -- | -- |
| 52.13 | 0.336 | 10.6 | -0.862 | 0.519 | -0.53 | 0.539 | -- | -0.234 | 19 | 1011 | 19556 | -- | -- |
| 52.5 | 0.337 | 10.6 | -0.99 | 0.525 | -0.537 | -- | 0.393 | -0.256 | 18.9 | 1011 | 19932 | -- | -- |
| 52.85 | 0.339 | 10.6 | -0.87 | 0.521 | -0.532 | -- | -- | -0.231 | 18.8 | 1011 | 19810 | -- | -- |
| 66.9 | 0.381 | 10.6 | -0.985 | -- | -0.538 | -- | 0.371 | -0.258 | -- | 1011 | 19447 | -- | -- |
| 61.34 | 0.367 | 10.6 | -0.707 | 0.52 | -- | 0.55 | -- | -0.154 | 19.1 | -- | -- | -- | -- |
| 62.12 | 0.369 | 10.6 | -0.717 | 0.523 | -- | -- | -- | -0.152 | 18.9 | -- | -- | -- | -- |
| 67.25 | 0.382 | 10.6 | -0.875 | -- | -0.533 | -- | -- | -0.225 | -- | 1011 | 19314 | -- | -- |
| 71.54 | 0.394 | 10.6 | -- | 0.532 | -0.348 | -- | -- | -0.174 | 18.8 | 1011 | 15783 | -- | -- |
| 76.45 | 0.409 | 10.6 | -0.728 | -- | -- | -- | -- | -0.162 | -- | -- | -- | -- | -- |
| 75.68 | 0.407 | 10.6 | -- | 0.531 | -- | -- | -- | -0.072 | 18.8 | -- | -- | -- | -- |
| 86.39 | 0.433 | 10.6 | -- | -- | -0.352 | -- | -- | -0.181 | -- | 1011 | 16023 | -- | -- |
| 90.44 | 0.444 | 10.6 | -- | -- | -- | -- | -- | -0.0809 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.70 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 29 | 51.54 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 54 | 51.79 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 65 | 51.86 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 68 | 51.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 69 | 51.91 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 72 | 51.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 81 | 51.97 | radiation | 30 | 43200 | < th | dose independent | sin | 9 | NA |
| 82 | 51.97 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 85 | 51.98 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 86 | 51.99 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 106 | 52.01 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 112 | 52.01 | radiation | 30 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 148 | 52.06 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 152 | 52.07 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 154 | 52.07 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 156 | 52.08 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 165 | 52.08 | radiation | 10 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 248 | 52.18 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 266 | 52.20 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 267 | 52.20 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 279 | 52.22 | temperature | 20 | 90 | > th | dose dependent | sin | 21 | NA |
| 280 | 52.22 | radiation | 30 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 299 | 52.23 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 309 | 52.25 | temperature | 15 | 10 | > th | dose dependent | sin | 20 | NA |
| 352 | 52.29 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 353 | 52.29 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 431 | 52.33 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 432 | 52.33 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 11 |
| 435 | 52.33 | atmosphere | 1010 | 14400 | > th | dose dependent | sin | 13 | NA |
| 455 | 52.34 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 5 |
| 546 | 52.36 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 10 | 17 |
| 560 | 52.37 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 564 | 52.37 | radiation | 40 | 43200 | > th | dose dependent | sin | 9 | NA |
| 606 | 52.38 | radiation | 10 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 656 | 52.39 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 659 | 52.39 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 712 | 52.40 | atmosphere | 1010 | 14400 | > th | dose dependent | no | NA | NA |
| 715 | 52.40 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 778 | 52.40 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 799 | 52.41 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 838 | 52.42 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 11 |
| 953 | 52.45 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |