Os06g0724800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os06g0724800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 325.41 | 0.848 | 6.69 | -0.755 | 6.48 | -2.57 | -0.0562 | 0.072 | -0.644 | 5.74 | 20.22 | 254 | 19.9 | 6.37 |
| 323.78 | 0.838 | 6.71 | -0.747 | 6.44 | -2.61 | -0.0426 | -- | -0.662 | 5.7 | 20.35 | 273 | 19.5 | 6.51 |
| 324.66 | 0.839 | 6.69 | -0.766 | 6.49 | -2.51 | -- | 0.0716 | -0.655 | 5.75 | 20.36 | 251 | 19.8 | 6.55 |
| 318.27 | 0.831 | 6.69 | -0.819 | 6.47 | -2.62 | -- | -- | -0.645 | 5.7 | 20.75 | 278 | 19.4 | 6.82 |
| 1889.17 | 2.04 | 6.79 | -0.665 | -- | -2.51 | -- | 0.25 | -0.459 | -- | 20.01 | 61 | 19 | 7.49 |
| 481.12 | 1.03 | 6.69 | -1.04 | 6.04 | -- | 0.311 | -- | -0.717 | 6.84 | -- | -- | -- | -- |
| 481.37 | 1.03 | 6.69 | -1.03 | 6.04 | -- | -- | -- | -0.718 | 6.83 | -- | -- | -- | -- |
| 1013.97 | 1.49 | 6.7 | -0.321 | -- | -3.63 | -- | -- | -0.0819 | -- | 19.01 | 104 | 14.4 | 10.9 |
| 335.38 | 0.853 | 6.67 | -- | 6.49 | -2.7 | -- | -- | -0.539 | 5.68 | 20.73 | 276 | 19.4 | 6.91 |
| 2394.35 | 2.29 | 6.82 | -0.901 | -- | -- | -- | -- | -0.601 | -- | -- | -- | -- | -- |
| 509.5 | 1.06 | 6.67 | -- | 6.03 | -- | -- | -- | -0.602 | 6.84 | -- | -- | -- | -- |
| 399.06 | 0.93 | 6.81 | -- | -- | -5.5 | -- | -- | -0.52 | -- | 19.14 | 404 | 8.7 | 14.1 |
| 2415.77 | 2.29 | 6.8 | -- | -- | -- | -- | -- | -0.501 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 329.26 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 6 |
| 8 | 345.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 6 |
| 10 | 347.76 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 5 |
| 20 | 353.88 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 1 |
| 21 | 355.17 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 7 |
| 22 | 355.23 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 17 |
| 23 | 355.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 4 |
| 27 | 357.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 29 | 357.73 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 20 |
| 31 | 357.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 39 | 358.99 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 18 |
| 40 | 359.37 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 20 |
| 47 | 360.57 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 4 |
| 59 | 362.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 5 |
| 62 | 362.97 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 15 |
| 99 | 368.94 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 19 |
| 104 | 369.74 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 13 |
| 168 | 376.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 18 |
| 179 | 377.30 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 185 | 377.59 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 11 |
| 186 | 377.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 7 |
| 194 | 378.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 197 | 379.03 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 20 |
| 200 | 379.15 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 14 |
| 240 | 381.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 242 | 381.14 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 278 | 382.41 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 19 |
| 291 | 383.14 | temperature | 20 | 270 | > th | dose independent | sin | 13 | NA |
| 321 | 383.83 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 322 | 383.87 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 331 | 384.06 | temperature | 20 | 270 | < th | dose independent | sin | 12 | NA |
| 370 | 385.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 391 | 386.49 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 409 | 386.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 12 |
| 426 | 387.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 435 | 387.32 | temperature | 25 | 720 | < th | dose dependent | sin | 17 | NA |
| 461 | 387.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 562 | 389.92 | temperature | 20 | 720 | > th | dose independent | sin | 18 | NA |
| 627 | 391.42 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 16 |
| 677 | 392.21 | temperature | 20 | 10 | < th | dose independent | sin | 9 | NA |
| 710 | 392.69 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 778 | 393.54 | temperature | 20 | 720 | < th | dose independent | sin | 18 | NA |
| 824 | 394.23 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 16 |
| 907 | 395.28 | radiation | 10 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 918 | 395.42 | temperature | 20 | 10 | > th | dose independent | sin | 9 | NA |
| 966 | 395.92 | radiation | 10 | 14400 | < th | dose dependent | rect. | 24 | 4 |