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Os06g0722700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.81 (0.0231) R2 : 0.235
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.646 (0.0551) R2dC : 0.231 R2C : 0.228
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0872 (0.0487) R2dN8 : 0.00695 R2N8 : 0.00398
σ : 0.436
deviance : 87.02
__
_____
C
peak time of C : 12.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.38 0.383 5.8 0.42 0.556 -1.1 0.218 -1.72 0.212 12.4 1.012 1408 -- --
67.83 0.384 5.8 0.596 0.55 -0.891 0.321 -- 0.234 12.5 1.604 1398 -- --
66.57 0.38 5.8 0.422 0.552 -1.11 -- -1.78 0.212 12.3 1.01 1407 -- --
68.1 0.384 5.8 0.607 0.524 -0.898 -- -- 0.244 12.5 1.603 1393 -- --
82.46 0.423 5.8 0.46 -- -1.22 -- -1.72 0.253 -- 1.08 2725 -- --
80.38 0.42 5.8 0.461 0.653 -- 0.408 -- 0.139 12.4 -- -- -- --
81.06 0.422 5.8 0.476 0.652 -- -- -- 0.14 12.3 -- -- -- --
80.86 0.419 5.77 0.602 -- -1.07 -- -- 0.29 -- 1.619 2695 -- --
77.38 0.41 5.79 -- 0.542 -0.706 -- -- 0.226 12.5 2.149 1388 -- --
107.81 0.485 5.81 0.454 -- -- -- -- 0.13 -- -- -- -- --
87.02 0.436 5.81 -- 0.646 -- -- -- 0.0872 12.2 -- -- -- --
89.18 0.44 5.78 -- -- -0.986 -- -- 0.27 -- 2.1 2681 -- --
113.25 0.497 5.82 -- -- -- -- -- 0.0797 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.98 radiation 1.0 720 > th dose independent rect. 17 2
13 63.60 temperature 25.0 720 > th dose dependent rect. 16 13
20 63.72 temperature 15.0 720 > th dose dependent rect. 17 2
24 63.78 temperature 25.0 720 > th dose dependent rect. 17 2
25 63.81 humidity 50.0 720 > th dose dependent rect. 18 6
30 63.85 temperature 25.0 720 > th dose dependent rect. 17 4
37 64.03 radiation 1.0 720 > th dose independent rect. 9 10
60 64.05 radiation 1.0 720 < th dose independent rect. 17 8
68 64.16 radiation 1.0 720 < th dose dependent rect. 17 8
71 64.26 radiation 1.0 720 > th dose independent rect. 17 20
75 64.38 temperature 25.0 720 > th dose dependent sin 12 NA
88 64.66 humidity 80.0 720 < th dose independent rect. 17 2
93 64.76 precipitation 0.1 720 < th dose independent rect. 15 14
94 64.76 precipitation 0.1 720 < th dose dependent rect. 15 14
146 65.41 precipitation 0.1 720 < th dose independent rect. 7 22
147 65.41 precipitation 0.1 720 < th dose dependent rect. 7 22
149 65.44 humidity 90.0 720 < th dose dependent rect. 17 8
160 65.65 radiation 1.0 720 < th dose independent rect. 5 19
180 65.79 radiation 1.0 720 < th dose dependent rect. 6 19
194 65.89 humidity 90.0 720 < th dose dependent rect. 17 4
210 66.03 humidity 50.0 720 > th dose dependent rect. 17 16
222 66.13 precipitation 0.1 720 < th dose independent rect. 17 10
223 66.13 precipitation 0.1 720 < th dose dependent rect. 17 10
224 66.14 temperature 30.0 720 < th dose independent rect. 18 15
229 66.19 humidity 90.0 720 < th dose dependent rect. 17 2
237 66.23 precipitation 0.1 720 < th dose independent rect. 17 18
238 66.23 precipitation 0.1 720 < th dose dependent rect. 17 18
253 66.37 humidity 70.0 720 > th dose dependent rect. 21 1
257 66.38 temperature 25.0 720 > th dose independent rect. 17 2
258 66.38 humidity 70.0 720 > th dose independent rect. 18 15
272 66.51 temperature 30.0 1440 > th dose independent rect. 13 1
282 66.59 precipitation 0.1 720 < th dose independent rect. 7 14
284 66.59 precipitation 0.1 720 < th dose dependent rect. 7 14
298 66.71 temperature 30.0 720 < th dose independent rect. 13 18
306 66.75 temperature 30.0 1440 < th dose independent rect. 13 1
321 66.82 humidity 70.0 720 > th dose independent sin 11 NA
322 66.82 humidity 70.0 720 > th dose independent rect. 18 6
324 66.83 humidity 90.0 720 < th dose dependent rect. 16 20
355 66.97 humidity 80.0 1440 > th dose independent rect. 5 14
356 66.97 humidity 80.0 1440 < th dose independent rect. 5 14
362 66.98 humidity 60.0 1440 > th dose dependent rect. 9 14
380 67.02 humidity 50.0 1440 > th dose dependent rect. 4 19
396 67.06 radiation 1.0 1440 > th dose independent rect. 5 14
413 67.07 radiation 1.0 1440 > th dose independent no NA NA
504 67.12 humidity 50.0 1440 > th dose dependent sin 19 NA
534 67.16 humidity 80.0 1440 > th dose independent rect. 6 16
585 67.21 humidity 50.0 1440 > th dose dependent rect. 9 22
587 67.22 temperature 30.0 1440 > th dose independent rect. 13 6
608 67.23 precipitation 0.1 720 < th dose independent rect. 1 18
611 67.23 precipitation 0.1 720 < th dose dependent rect. 1 18
615 67.24 humidity 70.0 1440 > th dose independent rect. 18 22
646 67.27 radiation 1.0 720 > th dose independent sin 15 NA
669 67.29 wind 1.0 43200 < th dose dependent rect. 24 4
680 67.30 humidity 90.0 1440 < th dose dependent rect. 13 23
681 67.31 radiation 1.0 720 > th dose independent sin 19 NA
687 67.31 radiation 1.0 720 > th dose dependent rect. 17 13
692 67.31 humidity 50.0 1440 > th dose dependent rect. 13 23
693 67.32 humidity 80.0 1440 < th dose independent sin 1 NA
697 67.32 humidity 90.0 1440 < th dose dependent rect. 3 20
701 67.33 humidity 80.0 1440 > th dose independent sin 1 NA
704 67.33 temperature 30.0 1440 < th dose independent rect. 13 6
716 67.33 humidity 90.0 1440 < th dose dependent rect. 9 22
720 67.34 temperature 30.0 1440 < th dose independent rect. 13 14
733 67.35 temperature 30.0 1440 < th dose independent rect. 13 12
745 67.36 radiation 1.0 1440 > th dose independent sin 0 NA
754 67.36 humidity 50.0 720 > th dose dependent sin 13 NA
756 67.36 humidity 50.0 1440 > th dose dependent no NA NA
771 67.37 humidity 90.0 1440 < th dose dependent rect. 9 14
776 67.37 humidity 50.0 1440 > th dose dependent rect. 20 23
812 67.39 radiation 1.0 1440 > th dose independent sin 13 NA
815 67.39 humidity 50.0 1440 > th dose dependent rect. 13 10
848 67.41 radiation 1.0 1440 < th dose independent rect. 16 23
854 67.41 humidity 90.0 1440 < th dose dependent rect. 9 17
860 67.42 temperature 30.0 720 < th dose independent rect. 18 7
913 67.45 humidity 90.0 1440 < th dose dependent no NA NA
915 67.45 radiation 40.0 1440 < th dose dependent rect. 16 15
951 67.47 humidity 90.0 1440 < th dose dependent sin 18 NA
966 67.48 radiation 1.0 1440 < th dose independent rect. 5 14
968 67.48 humidity 70.0 1440 < th dose independent rect. 18 22
980 67.48 humidity 90.0 1440 < th dose dependent rect. 20 23