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Os06g0720700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.64 (0.0504) R2 : 0.342
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.813 (0.121) R2dC : 0.0666 R2C : -0.00883
β3 : -2.45 (0.234) R2dE : 0.182 R2E : -0.032
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.36 (0.112) R2dN8 : 0.317 R2N8 : 0.099
σ : 0.931
deviance : 399.8
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C
peak time of C : 10
E
wheather : humidity
threshold : 90.59
memory length : 7296
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.54
open length of G : 2.36

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
396.63 0.936 7.63 0.255 0.816 -2.28 0.148 -1.52 -1.32 10.1 89.91 7304 7.43 2.69
400 0.931 7.63 0.135 0.792 -2.39 0.17 -- -1.33 10.1 90.37 7287 7.47 2.56
396.26 0.927 7.63 0.209 0.821 -2.28 -- -1.61 -1.31 10 90.39 7304 7.48 2.77
399.69 0.931 7.64 0.0739 0.82 -2.46 -- -- -1.35 10 90.52 7302 7.49 2.38
434.67 0.971 7.66 0.0797 -- -2.13 -- -1.46 -1.35 -- 90.87 7209 8.08 1.82
496.03 1.04 7.55 0.217 0.781 -- 0.12 -- -0.931 10 -- -- -- --
496.08 1.04 7.54 0.222 0.781 -- -- -- -0.931 9.99 -- -- -- --
438.44 0.975 7.65 0.0704 -- -2.13 -- -- -1.31 -- 90.75 7231 8.12 1.6
399.8 0.931 7.64 -- 0.813 -2.45 -- -- -1.36 10 90.59 7296 7.54 2.36
532.8 1.08 7.57 0.212 -- -- -- -- -0.931 -- -- -- -- --
497.38 1.04 7.55 -- 0.78 -- -- -- -0.955 9.97 -- -- -- --
438.4 0.975 7.66 -- -- -2.23 -- -- -1.35 -- 90.89 7244 8.14 1.55
533.98 1.08 7.57 -- -- -- -- -- -0.955 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 407.00 humidity 90.0 14400 > th dose dependent rect. 9 1
5 415.11 humidity 90.0 14400 < th dose dependent rect. 8 7
6 415.22 wind 3.0 14400 < th dose dependent rect. 24 6
9 415.33 humidity 90.0 14400 < th dose dependent rect. 11 1
11 415.66 humidity 90.0 14400 > th dose independent rect. 9 1
12 415.68 humidity 50.0 14400 > th dose dependent rect. 8 7
22 415.85 humidity 50.0 14400 > th dose dependent rect. 11 1
127 418.56 humidity 70.0 14400 > th dose independent rect. 17 1
139 418.76 humidity 60.0 14400 > th dose independent rect. 14 2
164 419.28 humidity 60.0 14400 < th dose independent rect. 11 5
169 419.40 humidity 60.0 14400 > th dose independent rect. 11 6
170 419.41 humidity 80.0 14400 < th dose independent rect. 10 1
173 419.42 humidity 60.0 14400 > th dose independent rect. 13 4
191 419.58 humidity 90.0 14400 < th dose dependent sin 0 NA
207 419.82 precipitation 0.1 14400 > th dose independent rect. 15 2
217 419.89 humidity 60.0 14400 < th dose independent rect. 13 3
222 419.95 precipitation 0.1 14400 < th dose independent rect. 15 2
223 419.95 precipitation 0.1 14400 < th dose dependent rect. 15 2
241 420.19 humidity 90.0 14400 > th dose independent rect. 7 3
265 420.51 humidity 90.0 14400 > th dose dependent rect. 7 10
276 420.64 wind 3.0 14400 < th dose dependent rect. 4 2
286 420.75 precipitation 0.1 14400 > th dose dependent rect. 15 2
293 420.82 humidity 50.0 14400 > th dose dependent sin 0 NA
326 421.10 wind 3.0 14400 < th dose independent rect. 24 1
384 421.68 humidity 90.0 14400 > th dose independent rect. 7 1
399 421.82 humidity 60.0 14400 > th dose independent rect. 23 18
400 421.82 humidity 60.0 14400 > th dose independent rect. 20 21
402 421.83 humidity 60.0 14400 > th dose independent rect. 3 14
406 421.84 humidity 60.0 14400 > th dose independent rect. 7 10
447 422.04 humidity 60.0 14400 > th dose independent rect. 11 22
475 422.23 humidity 60.0 14400 < th dose independent rect. 11 21
490 422.30 humidity 60.0 14400 < th dose independent rect. 20 20
493 422.31 humidity 60.0 14400 < th dose independent rect. 7 9
522 422.34 humidity 60.0 14400 < th dose independent rect. 11 11
525 422.34 humidity 60.0 14400 > th dose independent rect. 11 14
530 422.34 humidity 60.0 14400 > th dose independent rect. 11 18
545 422.36 humidity 60.0 14400 > th dose independent rect. 11 11
677 423.13 humidity 60.0 14400 > th dose independent sin 21 NA
699 423.23 humidity 60.0 14400 < th dose independent sin 22 NA
781 423.45 wind 1.0 14400 > th dose dependent rect. 24 9
874 423.72 humidity 70.0 14400 > th dose independent rect. 17 16
930 423.92 humidity 90.0 14400 < th dose independent rect. 7 2
968 424.05 humidity 60.0 14400 > th dose independent rect. 3 22
969 424.05 humidity 60.0 14400 > th dose independent rect. 23 23
970 424.05 humidity 90.0 14400 > th dose dependent rect. 16 1
976 424.06 humidity 60.0 14400 > th dose independent no NA NA
979 424.06 humidity 60.0 14400 > th dose independent rect. 5 20
983 424.06 humidity 60.0 14400 > th dose independent rect. 7 22
994 424.07 humidity 60.0 14400 > th dose independent rect. 5 17
995 424.07 humidity 60.0 14400 > th dose independent rect. 7 17