Os06g0720400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0720400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.54 | 0.213 | 13.5 | -0.0595 | 0.233 | 0.817 | -0.0929 | -0.6 | 0.156 | 1.34 | 9.708 | 446 | -- | -- |
| 20.79 | 0.212 | 13.4 | 0.0378 | 0.22 | 0.792 | -0.0714 | -- | 0.181 | 1.17 | 10.64 | 475 | -- | -- |
| 20.57 | 0.211 | 13.5 | -0.0536 | 0.227 | 0.813 | -- | -0.581 | 0.158 | 1.25 | 9.8 | 457 | -- | -- |
| 20.81 | 0.212 | 13.4 | 0.042 | 0.224 | 0.797 | -- | -- | 0.183 | 1.27 | 10.55 | 466 | -- | -- |
| 21.97 | 0.218 | 13.5 | -0.0747 | -- | 0.819 | -- | -0.53 | 0.153 | -- | 10.51 | 717 | -- | -- |
| 27.98 | 0.248 | 13.4 | 0.223 | 0.274 | -- | 0.0446 | -- | 0.302 | 21.9 | -- | -- | -- | -- |
| 27.99 | 0.248 | 13.4 | 0.222 | 0.274 | -- | -- | -- | 0.302 | 21.9 | -- | -- | -- | -- |
| 22.19 | 0.219 | 13.4 | 0.0212 | -- | 0.81 | -- | -- | 0.179 | -- | 11.69 | 717 | -- | -- |
| 20.85 | 0.213 | 13.4 | -- | 0.226 | 0.817 | -- | -- | 0.176 | 1.37 | 10.79 | 466 | -- | -- |
| 32.48 | 0.266 | 13.4 | 0.225 | -- | -- | -- | -- | 0.302 | -- | -- | -- | -- | -- |
| 29.29 | 0.253 | 13.4 | -- | 0.274 | -- | -- | -- | 0.277 | 21.9 | -- | -- | -- | -- |
| 22.2 | 0.219 | 13.4 | -- | -- | 0.819 | -- | -- | 0.175 | -- | 11.93 | 717 | -- | -- |
| 33.81 | 0.271 | 13.4 | -- | -- | -- | -- | -- | 0.277 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 3 | 20.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 4 | 20.56 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 8 | 20.58 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 10 | 20.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 10 |
| 11 | 20.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 12 |
| 16 | 20.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 38 | 20.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 39 | 20.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 41 | 20.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 46 | 20.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 48 | 20.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 51 | 20.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 61 | 20.73 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 82 | 20.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 91 | 20.75 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 101 | 20.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 110 | 20.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 111 | 20.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 16 |
| 121 | 20.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 128 | 20.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 137 | 20.79 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 138 | 20.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 190 | 20.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 202 | 20.84 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 206 | 20.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 15 |
| 243 | 20.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 249 | 20.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 259 | 20.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 261 | 20.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 337 | 20.90 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 345 | 20.90 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 367 | 20.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 429 | 20.93 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 22 |
| 442 | 20.93 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 480 | 20.94 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 522 | 20.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 539 | 20.96 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 580 | 20.98 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 609 | 20.99 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 610 | 20.99 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 709 | 21.02 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 715 | 21.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 892 | 21.07 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 893 | 21.07 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 952 | 21.09 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 976 | 21.10 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |