Os06g0720000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0720000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.32 | 0.536 | 6.27 | 0.767 | 1.19 | -0.905 | -0.692 | 0.00937 | 0.989 | 7.23 | 11.06 | 206 | -- | -- |
| 130 | 0.531 | 6.28 | 0.76 | 1.23 | -0.873 | -0.688 | -- | 0.977 | 7.16 | 10.91 | 187 | -- | -- |
| 131.3 | 0.534 | 6.27 | 0.754 | 1.22 | -0.866 | -- | -0.0473 | 0.994 | 7.09 | 11.03 | 187 | -- | -- |
| 130.37 | 0.532 | 6.27 | 0.762 | 1.29 | -0.865 | -- | -- | 0.994 | 7.2 | 10.91 | 149 | -- | -- |
| 139.8 | 0.551 | 6.3 | 0.703 | -- | -1.8 | -- | 0.769 | 1.01 | -- | 2.1 | 637 | -- | -- |
| 148.03 | 0.57 | 6.3 | 0.614 | 1.56 | -- | -0.306 | -- | 0.907 | 5.09 | -- | -- | -- | -- |
| 148.26 | 0.57 | 6.3 | 0.614 | 1.56 | -- | -- | -- | 0.908 | 5.08 | -- | -- | -- | -- |
| 140.24 | 0.552 | 6.3 | 0.69 | -- | -1.8 | -- | -- | 1.01 | -- | 2.11 | 637 | -- | -- |
| 144.41 | 0.56 | 6.29 | -- | 1.29 | -0.798 | -- | -- | 0.948 | 7.03 | 9.968 | 161 | -- | -- |
| 275.73 | 0.776 | 6.32 | 0.67 | -- | -- | -- | -- | 0.948 | -- | -- | -- | -- | -- |
| 158.21 | 0.588 | 6.31 | -- | 1.57 | -- | -- | -- | 0.84 | 5.06 | -- | -- | -- | -- |
| 152.61 | 0.575 | 6.32 | -- | -- | -1.8 | -- | -- | 0.947 | -- | 3.73 | 629 | -- | -- |
| 287.58 | 0.792 | 6.33 | -- | -- | -- | -- | -- | 0.874 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.43 | radiation | 1 | 270 | > th | dose independent | sin | 1 | NA |
| 2 | 129.67 | radiation | 1 | 270 | < th | dose independent | sin | 1 | NA |
| 3 | 129.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 5 | 129.90 | humidity | 80 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 6 | 129.92 | humidity | 60 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 7 | 130.02 | radiation | 1 | 270 | < th | dose dependent | sin | 1 | NA |
| 8 | 130.04 | humidity | 60 | 30 | > th | dose dependent | rect. | 5 | 16 |
| 12 | 130.11 | radiation | 10 | 270 | > th | dose independent | rect. | 15 | 23 |
| 13 | 130.29 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 13 |
| 23 | 130.53 | radiation | 1 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 26 | 130.55 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 29 | 130.58 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 10 |
| 32 | 130.65 | radiation | 10 | 270 | > th | dose independent | rect. | 17 | 23 |
| 36 | 130.75 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 10 |
| 52 | 130.78 | radiation | 20 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 54 | 130.82 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 15 |
| 72 | 131.08 | humidity | 80 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 75 | 131.09 | humidity | 60 | 30 | > th | dose dependent | sin | 0 | NA |
| 76 | 131.09 | radiation | 20 | 270 | < th | dose dependent | sin | 3 | NA |
| 82 | 131.16 | radiation | 20 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 83 | 131.17 | humidity | 50 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 87 | 131.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 105 | 131.37 | radiation | 20 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 107 | 131.38 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 17 |
| 158 | 131.64 | humidity | 50 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 159 | 131.65 | humidity | 90 | 90 | > th | dose independent | rect. | 5 | 17 |
| 164 | 131.70 | humidity | 90 | 30 | < th | dose dependent | sin | 0 | NA |
| 194 | 131.77 | humidity | 90 | 30 | < th | dose dependent | rect. | 23 | 19 |
| 215 | 131.87 | radiation | 10 | 270 | > th | dose independent | no | NA | NA |
| 317 | 131.99 | humidity | 60 | 30 | > th | dose dependent | rect. | 14 | 23 |
| 328 | 132.06 | humidity | 80 | 10 | < th | dose independent | rect. | 8 | 10 |
| 333 | 132.09 | humidity | 80 | 90 | > th | dose dependent | sin | 23 | NA |
| 340 | 132.13 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 17 |
| 374 | 132.28 | humidity | 50 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 390 | 132.37 | humidity | 60 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 394 | 132.38 | radiation | 20 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 477 | 132.66 | humidity | 90 | 30 | < th | dose dependent | rect. | 4 | 14 |
| 483 | 132.68 | humidity | 60 | 30 | > th | dose dependent | rect. | 11 | 21 |
| 542 | 132.76 | humidity | 50 | 30 | > th | dose dependent | no | NA | NA |
| 561 | 132.82 | radiation | 20 | 270 | < th | dose dependent | no | NA | NA |
| 581 | 132.84 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 17 |
| 590 | 132.88 | wind | 7 | 90 | < th | dose independent | rect. | 6 | 23 |
| 610 | 132.94 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 11 |
| 674 | 133.07 | radiation | 10 | 270 | < th | dose independent | rect. | 24 | 23 |
| 682 | 133.08 | humidity | 60 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 692 | 133.11 | radiation | 1 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 716 | 133.18 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 10 |
| 740 | 133.22 | radiation | 10 | 270 | < th | dose independent | rect. | 22 | 23 |
| 845 | 133.27 | wind | 9 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 846 | 133.28 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 891 | 133.37 | radiation | 30 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 939 | 133.48 | wind | 7 | 270 | < th | dose independent | rect. | 6 | 20 |
| 983 | 133.53 | wind | 9 | 90 | < th | dose dependent | rect. | 7 | 21 |