Os06g0718100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alpha-expansin precursor.
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Os06g0718100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alpha-expansin precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.54 | 0.397 | 3.05 | 0.0838 | 0.077 | 1.54 | -0.0401 | 1.88 | 0.104 | 6.96 | 6.4 | 589 | -- | -- |
| 71.95 | 0.395 | 3.03 | 0.0851 | 0.0757 | 1.19 | 0.0773 | -- | 0.118 | 5 | 6.547 | 580 | -- | -- |
| 71.53 | 0.394 | 3.05 | 0.0825 | 0.0764 | 1.57 | -- | 1.95 | 0.106 | 6.61 | 6.5 | 571 | -- | -- |
| 71.85 | 0.395 | 3.03 | 0.0526 | 0.063 | 1.13 | -- | -- | 0.107 | 5.05 | 6.501 | 574 | -- | -- |
| 71.79 | 0.395 | 3.05 | 0.0743 | -- | 1.58 | -- | 2.1 | 0.104 | -- | 6.699 | 571 | -- | -- |
| 78.07 | 0.414 | 3.04 | -0.0959 | 0.0156 | -- | -0.171 | -- | 0.0624 | 19.4 | -- | -- | -- | -- |
| 78.05 | 0.414 | 3.04 | -0.0936 | 0.0411 | -- | -- | -- | 0.0612 | 0.195 | -- | -- | -- | -- |
| 72.01 | 0.395 | 3.03 | 0.0316 | -- | 1.16 | -- | -- | 0.111 | -- | 7.3 | 589 | -- | -- |
| 71.88 | 0.395 | 3.03 | -- | 0.0641 | 1.09 | -- | -- | 0.1 | 5.44 | 6.5 | 574 | -- | -- |
| 78.16 | 0.413 | 3.04 | -0.0923 | -- | -- | -- | -- | 0.0618 | -- | -- | -- | -- | -- |
| 78.28 | 0.414 | 3.04 | -- | 0.0398 | -- | -- | -- | 0.0716 | 0.0679 | -- | -- | -- | -- |
| 72.03 | 0.395 | 3.03 | -- | -- | 1.14 | -- | -- | 0.107 | -- | 7.3 | 589 | -- | -- |
| 78.38 | 0.413 | 3.04 | -- | -- | -- | -- | -- | 0.0721 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.85 | wind | 9 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 2 | 67.87 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 5 |
| 3 | 67.95 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 9 | 68.25 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 23 | 68.58 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 24 | 68.65 | wind | 9 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 29 | 69.11 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 39 | 69.11 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 49 | 69.15 | wind | 9 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 50 | 69.15 | wind | 9 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 65 | 69.96 | wind | 9 | 270 | > th | dose independent | rect. | 18 | 4 |
| 66 | 69.96 | wind | 7 | 270 | > th | dose independent | rect. | 17 | 18 |
| 67 | 69.96 | wind | 7 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 72 | 70.02 | wind | 9 | 270 | > th | dose independent | rect. | 18 | 16 |
| 74 | 70.04 | wind | 9 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 75 | 70.04 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 1 |
| 76 | 70.04 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 90 | 70.16 | wind | 7 | 270 | > th | dose dependent | rect. | 17 | 7 |
| 92 | 70.17 | wind | 9 | 4320 | > th | dose independent | rect. | 12 | 3 |
| 96 | 70.23 | wind | 7 | 720 | < th | dose independent | rect. | 3 | 21 |
| 136 | 70.42 | wind | 7 | 270 | > th | dose dependent | sin | 11 | NA |
| 140 | 70.47 | wind | 7 | 720 | < th | dose independent | rect. | 10 | 14 |
| 149 | 70.55 | wind | 7 | 270 | > th | dose independent | sin | 11 | NA |
| 153 | 70.61 | wind | 7 | 270 | < th | dose independent | sin | 11 | NA |
| 160 | 70.65 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 200 | 70.66 | wind | 7 | 720 | < th | dose independent | rect. | 3 | 14 |
| 230 | 70.83 | wind | 7 | 720 | < th | dose independent | rect. | 5 | 19 |
| 269 | 70.90 | wind | 7 | 720 | < th | dose independent | rect. | 19 | 22 |
| 276 | 70.92 | wind | 9 | 4320 | < th | dose independent | rect. | 12 | 3 |
| 295 | 70.96 | wind | 9 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 363 | 71.05 | wind | 7 | 720 | < th | dose independent | rect. | 19 | 20 |
| 379 | 71.11 | wind | 9 | 4320 | > th | dose dependent | rect. | 12 | 3 |
| 400 | 71.15 | atmosphere | 1010 | 30 | > th | dose dependent | sin | 0 | NA |
| 682 | 71.32 | wind | 7 | 720 | < th | dose independent | rect. | 21 | 18 |
| 684 | 71.32 | wind | 5 | 720 | > th | dose dependent | rect. | 9 | 13 |
| 763 | 71.46 | wind | 7 | 720 | < th | dose independent | rect. | 5 | 10 |
| 779 | 71.49 | wind | 7 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 798 | 71.51 | wind | 7 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 807 | 71.54 | humidity | 50 | 10 | > th | dose independent | sin | 7 | NA |
| 811 | 71.54 | wind | 7 | 720 | < th | dose independent | rect. | 10 | 23 |
| 821 | 71.58 | wind | 7 | 720 | > th | dose independent | rect. | 9 | 13 |
| 852 | 71.62 | wind | 5 | 270 | > th | dose dependent | rect. | 21 | 1 |
| 991 | 71.69 | wind | 7 | 720 | < th | dose independent | rect. | 12 | 10 |