Os06g0717800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase 2C-like protein.
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Os06g0717800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase 2C-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.7 | 0.161 | 11.6 | 0.344 | 0.459 | 0.352 | 0.0838 | -0.1 | 0.107 | 4.27 | 45.04 | 96 | -- | -- |
| 11.7 | 0.159 | 11.6 | 0.342 | 0.456 | 0.369 | 0.0326 | -- | 0.106 | 4.2 | 49.67 | 106 | -- | -- |
| 11.7 | 0.159 | 11.6 | 0.344 | 0.455 | 0.354 | -- | -0.0504 | 0.107 | 4.21 | 45.86 | 106 | -- | -- |
| 11.7 | 0.159 | 11.6 | 0.342 | 0.459 | 0.368 | -- | -- | 0.105 | 4.17 | 51.09 | 106 | -- | -- |
| 15.37 | 0.183 | 11.6 | 0.376 | -- | 0.583 | -- | -0.116 | 0.242 | -- | 15.4 | 306 | -- | -- |
| 13.5 | 0.172 | 11.7 | 0.333 | 0.635 | -- | -0.0691 | -- | 0.0818 | 3.09 | -- | -- | -- | -- |
| 13.51 | 0.172 | 11.7 | 0.335 | 0.635 | -- | -- | -- | 0.0822 | 3.1 | -- | -- | -- | -- |
| 13.58 | 0.172 | 11.7 | 0.361 | -- | 0.593 | -- | -- | 0.103 | -- | 2.958 | 408 | -- | -- |
| 14.75 | 0.179 | 11.7 | -- | 0.476 | 0.374 | -- | -- | 0.0643 | 4.07 | 60 | 106 | -- | -- |
| 36.54 | 0.282 | 11.7 | 0.362 | -- | -- | -- | -- | 0.0988 | -- | -- | -- | -- | -- |
| 16.46 | 0.19 | 11.7 | -- | 0.642 | -- | -- | -- | 0.045 | 3.1 | -- | -- | -- | -- |
| 16.88 | 0.191 | 11.7 | -- | -- | 0.587 | -- | -- | 0.0735 | -- | 9.675 | 386 | -- | -- |
| 39.99 | 0.295 | 11.7 | -- | -- | -- | -- | -- | 0.0587 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.65 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 3 | 10.68 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 14 | 10.82 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 16 | 10.86 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 14 |
| 26 | 10.91 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 13 |
| 31 | 10.93 | radiation | 40.0 | 90 | < th | dose dependent | sin | 2 | NA |
| 32 | 10.93 | radiation | 20.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 54 | 10.97 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 59 | 11.00 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 63 | 11.01 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 68 | 11.03 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 73 | 11.04 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 85 | 11.06 | wind | 7.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 100 | 11.08 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 104 | 11.09 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 113 | 11.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 148 | 11.14 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 155 | 11.15 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 157 | 11.16 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 162 | 11.16 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 167 | 11.16 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 4 | 13 |
| 169 | 11.16 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 170 | 11.17 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 178 | 11.18 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 179 | 11.18 | wind | 7.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 184 | 11.18 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 197 | 11.19 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 199 | 11.19 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 200 | 11.19 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 202 | 11.19 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 203 | 11.19 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 204 | 11.19 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 205 | 11.19 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 5 |
| 209 | 11.19 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 210 | 11.19 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 219 | 11.20 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 232 | 11.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 249 | 11.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 254 | 11.21 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 256 | 11.22 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 289 | 11.24 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 291 | 11.24 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 292 | 11.24 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 295 | 11.24 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 296 | 11.24 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 304 | 11.24 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 308 | 11.24 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 18 |
| 309 | 11.24 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 319 | 11.25 | radiation | 10.0 | 270 | < th | dose independent | sin | 5 | NA |
| 329 | 11.25 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 330 | 11.26 | radiation | 30.0 | 90 | < th | dose independent | sin | 5 | NA |
| 344 | 11.26 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 358 | 11.27 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 362 | 11.27 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 19 |
| 372 | 11.27 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 19 |
| 373 | 11.27 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 377 | 11.28 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 380 | 11.28 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 385 | 11.28 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 386 | 11.28 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 396 | 11.29 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 405 | 11.29 | radiation | 40.0 | 10 | < th | dose dependent | sin | 2 | NA |
| 416 | 11.30 | radiation | 1.0 | 270 | > th | dose independent | sin | 2 | NA |
| 418 | 11.30 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 419 | 11.30 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 431 | 11.30 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 436 | 11.31 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 438 | 11.31 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 439 | 11.31 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 442 | 11.31 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 443 | 11.31 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 445 | 11.31 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 450 | 11.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 451 | 11.31 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 460 | 11.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 461 | 11.31 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 466 | 11.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 471 | 11.31 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 18 | 10 |
| 479 | 11.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 488 | 11.32 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 508 | 11.33 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 509 | 11.33 | wind | 9.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 512 | 11.33 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 4 | 10 |
| 531 | 11.34 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 543 | 11.34 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 549 | 11.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 551 | 11.35 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 13 |
| 559 | 11.35 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 574 | 11.36 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 576 | 11.36 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 6 |
| 592 | 11.37 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 595 | 11.37 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 599 | 11.37 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 600 | 11.37 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 610 | 11.37 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 614 | 11.37 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 618 | 11.37 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 651 | 11.38 | humidity | 70.0 | 10 | > th | dose independent | rect. | 18 | 10 |
| 664 | 11.38 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 666 | 11.38 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 689 | 11.39 | radiation | 10.0 | 270 | > th | dose independent | sin | 5 | NA |
| 744 | 11.39 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 747 | 11.39 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 785 | 11.41 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 791 | 11.41 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 13 |
| 795 | 11.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 19 |
| 797 | 11.41 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 814 | 11.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 844 | 11.42 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 899 | 11.43 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 928 | 11.44 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 957 | 11.45 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 9 |
| 979 | 11.45 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 985 | 11.45 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 995 | 11.45 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 20 |