Os06g0715500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Translocon-associated protein alpha subunit precursor (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha).
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Os06g0715500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Translocon-associated protein alpha subunit precursor (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.67 | 0.203 | 12.9 | 0.197 | 0.211 | 0.204 | 0.0748 | -0.711 | 0.179 | 23.4 | 19.98 | 1293 | -- | -- |
| 19.75 | 0.207 | 12.9 | 0.179 | 0.209 | 0.195 | 0.231 | -- | 0.176 | 23.2 | 19.83 | 1266 | -- | -- |
| 18.64 | 0.201 | 12.9 | 0.197 | 0.218 | 0.209 | -- | -0.734 | 0.176 | 23.4 | 19.96 | 1261 | -- | -- |
| 19.89 | 0.208 | 12.9 | 0.162 | 0.219 | 0.172 | -- | -- | 0.16 | 23.5 | 19.98 | 1264 | -- | -- |
| 21.09 | 0.214 | 12.9 | 0.185 | -- | 0.148 | -- | -0.694 | 0.168 | -- | 26.57 | 1752 | -- | -- |
| 20.89 | 0.214 | 12.9 | 0.131 | 0.17 | -- | 0.19 | -- | 0.12 | 23.2 | -- | -- | -- | -- |
| 21.03 | 0.215 | 12.9 | 0.123 | 0.17 | -- | -- | -- | 0.119 | 23.6 | -- | -- | -- | -- |
| 21.36 | 0.215 | 12.9 | 0.197 | -- | 0.18 | -- | -- | 0.181 | -- | 3.815 | 1637 | -- | -- |
| 19.86 | 0.208 | 12.9 | -- | 0.141 | 0.231 | -- | -- | 0.141 | 23.5 | 70.78 | 1227 | -- | -- |
| 22.83 | 0.223 | 12.9 | 0.127 | -- | -- | -- | -- | 0.121 | -- | -- | -- | -- | -- |
| 21.42 | 0.217 | 12.9 | -- | 0.171 | -- | -- | -- | 0.105 | 23.6 | -- | -- | -- | -- |
| 21.43 | 0.216 | 12.9 | -- | -- | 0.258 | -- | -- | 0.134 | -- | 5.77 | 1660 | -- | -- |
| 23.26 | 0.225 | 12.9 | -- | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.28 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 17.28 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 17.58 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 5 | 17.80 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 12 | 18.10 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 8 |
| 13 | 18.10 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 18 | 18.19 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 21 | 18.20 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 39 | 18.22 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 43 | 18.22 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 53 | 18.26 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 57 | 18.28 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 59 | 18.28 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 72 | 18.31 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 77 | 18.31 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 79 | 18.31 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 82 | 18.32 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 109 | 18.35 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 134 | 18.38 | radiation | 10.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 163 | 18.42 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 166 | 18.42 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 174 | 18.43 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 221 | 18.46 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 1 | 8 |
| 241 | 18.48 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 24 | 9 |
| 244 | 18.49 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 339 | 18.57 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 14 |
| 383 | 18.60 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 419 | 18.62 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 427 | 18.63 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 454 | 18.65 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 460 | 18.66 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 494 | 18.68 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 563 | 18.71 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 21 | 11 |
| 567 | 18.71 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 571 | 18.72 | temperature | 20.0 | 10 | > th | dose independent | sin | 11 | NA |
| 574 | 18.72 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 593 | 18.73 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 5 |
| 626 | 18.74 | wind | 1.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 628 | 18.74 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 19 |
| 641 | 18.75 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 642 | 18.75 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 649 | 18.76 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 653 | 18.76 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 21 | 11 |
| 667 | 18.76 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 676 | 18.77 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 710 | 18.78 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 828 | 18.81 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 853 | 18.82 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 872 | 18.82 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 936 | 18.85 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 949 | 18.86 | radiation | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 950 | 18.86 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 951 | 18.86 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |