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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0715300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CEL5=CELLULASE 5 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.16 (0.0551) R2 : 0.552
β1 : -1.87 (0.247) R2dD : 0.0974 R2D : 0.218
β2 : 0.711 (0.137) R2dC : 0.0254 R2C : 0.0162
β3 : 1.25 (0.13) R2dE : 0.104 R2E : 0.197
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.38 (0.433) R2dD*E : 0.1 R2D*E : 0.252
γ1 : -0.589 (0.123) R2dN8 : 0.0376 R2N8 : 0.0504
σ : 0.982
deviance : 444.86
__
_____
C
peak time of C : 6.47
E
wheather : temperature
threshold : 19.8
memory length : 1435
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.05
open length of G : 0.549

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
445.13 0.991 4.16 -1.85 0.683 1.22 0.702 -3.38 -0.588 6.41 19.93 1479 6.04 0.566
496.57 1.04 4.27 -2.76 0.702 1.52 0.741 -- -0.829 6.42 20.41 1416 6.27 1.32
444.86 0.982 4.16 -1.87 0.711 1.25 -- -3.38 -0.589 6.47 19.8 1435 6.05 0.549
497.79 1.04 4.27 -2.75 0.711 1.53 -- -- -0.831 6.66 20.42 1413 6.26 1.32
465.5 1 4.17 -1.84 -- 1.21 -- -3.41 -0.584 -- 19.89 1533 6.16 0.297
592.78 1.14 4.36 -3.49 0.683 -- 0.757 -- -1.24 6.56 -- -- -- --
593.94 1.14 4.36 -3.48 0.687 -- -- -- -1.24 6.93 -- -- -- --
523.48 1.07 4.28 -2.74 -- 1.51 -- -- -0.818 -- 20.44 1432 6.25 1.33
617.9 1.16 4.19 -- 0.446 2.32 -- -- -0.432 7.86 20.28 2883 6.96 0.931
618.69 1.16 4.37 -3.47 -- -- -- -- -1.23 -- -- -- -- --
913.39 1.41 4.27 -- 0.65 -- -- -- -0.854 7.26 -- -- -- --
593.43 1.13 4.2 -- -- 3.08 -- -- -0.467 -- 20.3 4138 7.02 0.683
935.77 1.43 4.29 -- -- -- -- -- -0.844 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 445.78 atmosphere 995.0 43200 > th dose independent rect. 18 19
3 446.85 atmosphere 995.0 43200 < th dose independent rect. 18 19
6 447.74 atmosphere 995.0 43200 > th dose independent sin 7 NA
7 448.69 atmosphere 995.0 43200 > th dose independent rect. 20 17
10 448.76 atmosphere 995.0 43200 < th dose independent sin 7 NA
14 450.01 radiation 40.0 14400 > th dose independent rect. 7 1
30 450.01 radiation 40.0 14400 > th dose dependent rect. 7 1
50 451.08 atmosphere 995.0 43200 < th dose dependent rect. 11 19
52 451.58 atmosphere 995.0 43200 < th dose dependent rect. 13 20
54 452.10 atmosphere 995.0 43200 < th dose independent rect. 21 18
58 452.22 atmosphere 995.0 43200 < th dose independent rect. 21 16
64 452.29 temperature 20.0 1440 < th dose independent rect. 6 1
74 452.94 temperature 20.0 1440 > th dose independent rect. 6 1
75 453.15 atmosphere 995.0 43200 < th dose dependent sin 10 NA
79 453.69 atmosphere 995.0 43200 < th dose dependent rect. 16 17
80 453.89 wind 9.0 14400 > th dose independent rect. 23 2
83 454.11 wind 9.0 14400 > th dose dependent rect. 23 2
89 454.40 atmosphere 995.0 43200 > th dose independent rect. 24 11
95 454.89 atmosphere 995.0 43200 > th dose independent rect. 5 3
96 454.92 temperature 20.0 1440 < th dose dependent rect. 4 1
103 455.67 atmosphere 995.0 43200 > th dose independent rect. 2 8
104 455.69 atmosphere 995.0 43200 < th dose independent rect. 3 6
106 455.81 atmosphere 995.0 43200 > th dose independent rect. 3 6
108 455.88 atmosphere 995.0 43200 < th dose dependent rect. 1 8
111 455.94 atmosphere 995.0 43200 < th dose independent rect. 1 9
135 457.60 atmosphere 995.0 43200 < th dose dependent rect. 4 4
167 460.55 wind 9.0 14400 < th dose independent rect. 23 1
170 460.78 wind 3.0 4320 > th dose independent rect. 8 1
173 460.97 atmosphere 995.0 43200 < th dose independent rect. 5 3
177 461.34 atmosphere 995.0 43200 < th dose dependent sin 16 NA
183 461.98 temperature 20.0 1440 < th dose independent rect. 22 2
190 462.60 temperature 20.0 1440 > th dose independent rect. 21 3
218 464.25 precipitation 0.1 14400 < th dose independent rect. 13 1
219 464.25 precipitation 0.1 14400 < th dose dependent rect. 13 1
221 464.38 precipitation 0.1 14400 > th dose independent rect. 13 1
229 465.09 wind 3.0 4320 < th dose independent rect. 8 1
243 466.24 temperature 20.0 1440 < th dose independent rect. 21 12
247 466.48 temperature 20.0 1440 > th dose independent rect. 19 13
249 466.51 radiation 30.0 4320 < th dose independent rect. 7 1
303 467.78 humidity 90.0 14400 > th dose dependent rect. 12 2
328 468.84 temperature 20.0 4320 > th dose independent rect. 19 2
340 469.54 radiation 30.0 4320 < th dose independent rect. 22 10
343 469.58 radiation 30.0 4320 < th dose independent rect. 24 8
347 469.69 radiation 30.0 4320 < th dose independent rect. 19 13
368 469.84 radiation 30.0 4320 < th dose independent rect. 17 15
386 470.37 temperature 20.0 1440 > th dose independent sin 10 NA
388 470.42 temperature 20.0 1440 < th dose independent sin 10 NA
389 470.46 humidity 90.0 4320 > th dose dependent rect. 6 12
399 470.72 radiation 20.0 1440 < th dose dependent rect. 11 1
432 471.45 temperature 20.0 1440 < th dose independent rect. 1 8
446 471.72 temperature 20.0 1440 < th dose independent rect. 3 5
455 472.12 wind 3.0 43200 < th dose dependent rect. 8 1
474 472.69 temperature 20.0 1440 > th dose independent rect. 1 8
515 473.83 temperature 20.0 1440 > th dose independent rect. 3 5
529 474.18 wind 5.0 4320 < th dose dependent rect. 8 1
539 474.41 radiation 1.0 14400 > th dose independent rect. 11 1
544 474.51 radiation 1.0 14400 < th dose independent rect. 11 1
547 474.51 radiation 1.0 14400 < th dose dependent rect. 11 1
579 475.39 humidity 90.0 4320 > th dose dependent rect. 7 3
581 475.50 wind 9.0 14400 < th dose independent rect. 23 4
584 475.53 wind 1.0 14400 > th dose independent rect. 24 2
585 475.66 radiation 10.0 1440 < th dose dependent rect. 8 23
586 475.66 radiation 10.0 1440 < th dose dependent rect. 11 23
615 476.42 radiation 10.0 1440 < th dose dependent sin 0 NA
625 476.66 humidity 90.0 4320 > th dose dependent rect. 6 8
632 476.78 radiation 10.0 1440 < th dose dependent rect. 5 13
650 477.09 radiation 10.0 1440 < th dose dependent rect. 22 20
654 477.11 radiation 10.0 1440 < th dose dependent rect. 19 23
671 477.31 atmosphere 995.0 43200 < th dose dependent no NA NA
672 477.31 atmosphere 995.0 43200 < th dose dependent rect. 21 22
690 477.58 humidity 90.0 1440 < th dose dependent rect. 5 1
694 477.61 humidity 90.0 4320 > th dose dependent rect. 16 3
706 477.70 wind 5.0 14400 < th dose independent rect. 23 1
713 477.81 temperature 20.0 4320 < th dose independent rect. 19 2
718 477.91 wind 5.0 14400 > th dose dependent rect. 23 1
726 478.05 wind 3.0 4320 < th dose dependent rect. 6 1
736 478.24 humidity 90.0 4320 > th dose independent rect. 6 14
739 478.28 radiation 10.0 1440 < th dose dependent rect. 5 22
788 478.75 radiation 10.0 1440 < th dose dependent no NA NA
797 478.77 radiation 10.0 1440 < th dose dependent rect. 2 23
836 479.03 humidity 90.0 14400 > th dose dependent rect. 12 7
841 479.10 radiation 10.0 1440 < th dose dependent rect. 7 11
879 479.71 radiation 10.0 1440 < th dose independent rect. 11 19
908 480.11 radiation 10.0 1440 < th dose dependent rect. 16 23
912 480.19 humidity 90.0 14400 > th dose independent rect. 13 1
920 480.29 wind 3.0 4320 > th dose independent rect. 6 3
934 480.48 wind 1.0 14400 < th dose independent rect. 24 2
941 480.61 radiation 10.0 1440 < th dose dependent rect. 7 20
956 480.76 wind 3.0 4320 < th dose independent rect. 6 3
959 480.78 radiation 10.0 1440 < th dose dependent rect. 7 16
969 480.95 humidity 90.0 4320 > th dose dependent sin 23 NA