Os06g0714700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0714700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.85 | 0.289 | 14.4 | 0.324 | 0.706 | 0.141 | 0.467 | 2.35 | -0.131 | 3.8 | 9.2 | 5986 | -- | -- |
| 42.42 | 0.306 | 14.5 | -0.205 | 0.739 | 0.0912 | 0.48 | -- | -0.286 | 3.73 | 9.2 | 5986 | -- | -- |
| 38.36 | 0.288 | 14.4 | 0.336 | 0.711 | 0.163 | -- | 2.39 | -0.13 | 3.74 | 8.249 | 7084 | -- | -- |
| 43.09 | 0.308 | 14.5 | -0.209 | 0.736 | 0.076 | -- | -- | -0.286 | 3.65 | 9.2 | 5986 | -- | -- |
| 63.4 | 0.373 | 14.4 | 0.105 | -- | -0.727 | -- | 1.02 | -0.123 | -- | 5.005 | 6959 | -- | -- |
| 42.49 | 0.306 | 14.5 | -0.187 | 0.714 | -- | 0.472 | -- | -0.273 | 3.78 | -- | -- | -- | -- |
| 43.14 | 0.308 | 14.5 | -0.194 | 0.716 | -- | -- | -- | -0.275 | 3.69 | -- | -- | -- | -- |
| 64.28 | 0.375 | 14.4 | -0.0355 | -- | -0.709 | -- | -- | -0.162 | -- | 9.09 | 32865 | -- | -- |
| 43.35 | 0.307 | 14.4 | -- | 0.71 | -0.145 | -- | -- | -0.21 | 3.67 | 9.399 | 43341 | -- | -- |
| 71.52 | 0.395 | 14.5 | -0.164 | -- | -- | -- | -- | -0.256 | -- | -- | -- | -- | -- |
| 44.14 | 0.311 | 14.5 | -- | 0.712 | -- | -- | -- | -0.254 | 3.69 | -- | -- | -- | -- |
| 64.26 | 0.375 | 14.4 | -- | -- | -0.724 | -- | -- | -0.156 | -- | 7.64 | 47520 | -- | -- |
| 72.23 | 0.397 | 14.5 | -- | -- | -- | -- | -- | -0.238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.22 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 2 | 36.24 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 6 | 36.28 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 49 | 36.59 | wind | 9 | 43200 | > th | dose independent | sin | 11 | NA |
| 61 | 36.65 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 64 | 36.66 | wind | 7 | 43200 | > th | dose dependent | sin | 11 | NA |
| 65 | 36.67 | wind | 9 | 43200 | < th | dose independent | sin | 11 | NA |
| 69 | 36.68 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 80 | 36.71 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 97 | 36.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 100 | 36.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 115 | 36.78 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 132 | 36.81 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 153 | 36.85 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 241 | 36.98 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 6 |
| 280 | 37.02 | wind | 7 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 288 | 37.03 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 304 | 37.05 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 328 | 37.08 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 18 |
| 353 | 37.11 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 395 | 37.16 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 396 | 37.16 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 426 | 37.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 435 | 37.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 440 | 37.20 | wind | 7 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 441 | 37.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 450 | 37.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 482 | 37.24 | wind | 7 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 487 | 37.24 | wind | 5 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 493 | 37.25 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 507 | 37.26 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 532 | 37.28 | wind | 7 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 576 | 37.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 666 | 37.36 | wind | 1 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 686 | 37.37 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 688 | 37.37 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 708 | 37.38 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 13 |
| 709 | 37.38 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 10 | 14 |
| 717 | 37.39 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 749 | 37.40 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 753 | 37.40 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 19 |
| 757 | 37.40 | wind | 5 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 762 | 37.41 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 821 | 37.43 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 849 | 37.44 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 906 | 37.47 | atmosphere | 995 | 43200 | > th | dose independent | sin | 4 | NA |
| 945 | 37.48 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 17 | NA |
| 974 | 37.49 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 19 | NA |