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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0714400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.57 (0.0452) R2 : 0.268
β1 : -1.02 (0.166) R2dD : 0.0704 R2D : 0.093
β2 : 1.06 (0.133) R2dC : 0.16 R2C : -0.0222
β3 : -0.95 (0.122) R2dE : 0.152 R2E : -0.0215
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.401 (0.0964) R2dN8 : 0.0389 R2N8 : 0.0438
σ : 0.844
deviance : 328.63
__
_____
C
peak time of C : 13.2
E
wheather : radiation
threshold : 49.36
memory length : 91
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.88
open length of G : 18.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
318.35 0.838 3.55 -0.965 1 -0.882 -2.13 1.24 0.425 13.3 46.39 91 2.81 18.2
322.83 0.837 3.57 -1.01 1.04 -0.892 -1.51 -- 0.427 13.5 46.56 96 2.82 18.4
334.28 0.852 3.56 -0.999 1.04 -0.958 -- 0.973 0.405 13 48.91 90 2.85 18.4
328.63 0.844 3.57 -1.02 1.06 -0.95 -- -- 0.401 13.2 49.36 91 2.88 18.4
368.24 0.899 3.59 -1.22 -- -0.436 -- 0.427 0.341 -- 31.23 18 3.22 19.6
365.91 0.897 3.58 -1.16 0.502 -- -1.43 -- 0.39 14 -- -- -- --
373.56 0.905 3.58 -1.2 0.506 -- -- -- 0.382 14.4 -- -- -- --
363.16 0.888 3.58 -1.21 -- -0.502 -- -- 0.394 -- 19.91 19 3.13 20.3
360.11 0.884 3.56 -- 1.06 -0.93 -- -- 0.415 13.3 49.37 90 2.87 18.5
388.74 0.921 3.59 -1.23 -- -- -- -- 0.37 -- -- -- -- --
411.8 0.949 3.55 -- 0.529 -- -- -- 0.516 14.4 -- -- -- --
401.26 0.933 3.57 -- -- -0.484 -- -- 0.438 -- 19.71 18 2.88 20.9
428.39 0.966 3.56 -- -- -- -- -- 0.506 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 323.01 radiation 40.0 90 < th dose independent rect. 3 18
2 323.33 atmosphere 1000.0 270 > th dose independent rect. 8 16
5 325.34 atmosphere 1015.0 270 < th dose independent rect. 11 10
7 326.55 atmosphere 995.0 10 > th dose dependent rect. 9 18
9 326.72 precipitation 0.1 90 < th dose independent rect. 13 8
10 326.72 precipitation 0.1 90 < th dose dependent rect. 13 8
13 327.14 atmosphere 1000.0 10 > th dose independent rect. 9 18
16 327.35 temperature 10.0 90 > th dose independent rect. 13 8
18 327.35 atmosphere 1010.0 90 < th dose independent rect. 13 8
20 327.35 temperature 10.0 90 > th dose independent rect. 21 16
21 327.35 atmosphere 995.0 90 > th dose independent rect. 21 16
23 327.47 radiation 40.0 270 < th dose independent rect. 24 8
24 327.48 precipitation 0.1 90 < th dose independent rect. 21 16
25 327.48 precipitation 0.1 90 < th dose dependent rect. 21 16
28 327.60 humidity 50.0 270 > th dose independent rect. 8 16
30 327.72 wind 9.0 90 < th dose independent rect. 13 8
31 327.77 wind 1.0 90 > th dose independent rect. 13 8
32 327.80 radiation 1.0 720 > th dose independent rect. 18 1
45 327.91 precipitation 0.1 270 < th dose independent rect. 11 10
47 327.91 precipitation 0.1 270 < th dose dependent rect. 11 10
49 327.96 precipitation 0.1 270 < th dose independent rect. 24 8
50 327.96 precipitation 0.1 270 < th dose dependent rect. 24 8
51 327.97 atmosphere 1015.0 270 < th dose independent rect. 24 8
52 327.97 humidity 50.0 90 > th dose independent rect. 21 16
53 328.00 temperature 15.0 270 > th dose independent rect. 11 9
54 328.01 temperature 10.0 270 > th dose independent rect. 24 8
55 328.01 temperature 30.0 270 < th dose independent rect. 24 8
56 328.01 humidity 50.0 270 > th dose independent rect. 24 8
58 328.01 atmosphere 995.0 270 > th dose independent rect. 24 8
59 328.01 temperature 10.0 270 > th dose independent rect. 8 16
60 328.02 wind 9.0 270 < th dose independent rect. 24 8
67 328.25 temperature 10.0 270 > th dose independent rect. 21 14
68 328.25 humidity 50.0 270 > th dose independent rect. 21 14
69 328.25 atmosphere 995.0 270 > th dose independent rect. 21 14
70 328.26 temperature 15.0 90 > th dose independent rect. 3 18
71 328.41 precipitation 0.1 270 < th dose independent rect. 8 16
72 328.41 precipitation 0.1 270 < th dose dependent rect. 8 16
74 328.44 wind 9.0 270 < th dose independent rect. 11 9
81 328.71 wind 1.0 270 > th dose independent rect. 11 9
84 328.87 precipitation 0.1 270 < th dose independent rect. 21 14
85 328.87 precipitation 0.1 270 < th dose dependent rect. 21 14
86 328.89 wind 9.0 90 < th dose independent rect. 21 16
92 329.04 wind 3.0 14400 < th dose dependent rect. 17 1
93 329.07 wind 9.0 270 < th dose independent rect. 21 14
102 329.20 radiation 40.0 90 < th dose independent rect. 13 8
104 329.31 atmosphere 995.0 90 > th dose independent rect. 13 8
105 329.53 atmosphere 1000.0 90 > th dose independent rect. 21 6
108 329.80 atmosphere 1000.0 10 > th dose independent rect. 3 6
109 329.81 atmosphere 1000.0 90 > th dose independent rect. 2 7
111 329.86 wind 1.0 270 > th dose independent rect. 8 16
112 329.87 radiation 40.0 90 < th dose independent rect. 3 13
113 329.90 radiation 40.0 10 < th dose independent rect. 12 10
114 329.92 radiation 40.0 270 < th dose dependent rect. 24 8
115 329.97 wind 9.0 270 < th dose independent rect. 8 16
136 330.27 wind 1.0 14400 < th dose independent rect. 17 1
139 330.36 atmosphere 1015.0 270 < th dose independent rect. 11 21
145 330.52 atmosphere 1015.0 90 < th dose independent rect. 13 19
148 330.55 precipitation 0.1 90 < th dose independent rect. 3 18
149 330.55 precipitation 0.1 90 < th dose dependent rect. 3 18
150 330.59 temperature 30.0 90 < th dose independent rect. 21 16
153 330.68 atmosphere 995.0 270 > th dose independent rect. 11 9
155 330.72 humidity 60.0 90 > th dose independent rect. 2 7
163 330.95 precipitation 0.1 90 < th dose independent rect. 2 7
164 330.95 precipitation 0.1 90 < th dose dependent rect. 2 7
165 330.98 wind 9.0 90 < th dose independent rect. 2 7
166 330.98 temperature 10.0 90 > th dose independent rect. 2 7
170 330.98 atmosphere 1015.0 90 < th dose independent rect. 2 7
183 331.10 wind 9.0 90 < th dose independent rect. 3 18
184 331.11 wind 7.0 10 < th dose independent rect. 3 6
185 331.11 precipitation 0.1 10 < th dose independent rect. 9 18
186 331.11 precipitation 0.1 10 < th dose dependent rect. 9 18
187 331.15 atmosphere 995.0 10 > th dose dependent rect. 3 6
188 331.15 atmosphere 995.0 30 > th dose dependent rect. 21 6
190 331.17 temperature 10.0 10 > th dose independent rect. 3 6
192 331.17 temperature 30.0 10 < th dose independent rect. 3 6
193 331.17 humidity 50.0 10 > th dose independent rect. 3 6
196 331.17 atmosphere 1015.0 10 < th dose independent rect. 3 6
197 331.17 precipitation 0.1 10 < th dose independent rect. 3 6
198 331.17 temperature 10.0 10 > th dose independent rect. 9 18
199 331.17 precipitation 0.1 10 < th dose dependent rect. 3 6
209 331.23 humidity 50.0 270 > th dose dependent rect. 24 8
210 331.26 wind 1.0 14400 > th dose independent rect. 17 1
213 331.28 radiation 40.0 90 < th dose independent rect. 11 10
214 331.28 radiation 40.0 270 < th dose independent rect. 11 20
217 331.32 wind 9.0 90 < th dose dependent rect. 3 6
221 331.40 wind 9.0 270 < th dose dependent rect. 24 8
224 331.44 temperature 10.0 90 > th dose independent rect. 21 6
225 331.44 temperature 30.0 90 < th dose independent rect. 21 6
226 331.44 humidity 50.0 90 > th dose independent rect. 21 6
230 331.44 radiation 1.0 90 < th dose independent rect. 21 6
235 331.44 precipitation 0.1 90 < th dose independent rect. 21 6
237 331.44 atmosphere 1015.0 90 < th dose independent rect. 3 18
238 331.44 radiation 1.0 90 < th dose dependent rect. 21 6
243 331.44 precipitation 0.1 90 < th dose dependent rect. 21 6
245 331.47 temperature 10.0 10 > th dose dependent rect. 3 6
246 331.48 humidity 50.0 90 > th dose independent rect. 13 8
247 331.49 wind 1.0 14400 > th dose independent sin 19 NA
249 331.50 atmosphere 995.0 270 > th dose dependent rect. 24 7
253 331.51 wind 1.0 90 > th dose independent rect. 21 16
260 331.52 wind 9.0 90 < th dose independent rect. 21 6
278 331.67 radiation 40.0 90 < th dose independent rect. 2 7
281 331.68 wind 1.0 14400 < th dose independent sin 19 NA
301 331.87 wind 1.0 14400 > th dose independent rect. 16 4
304 331.90 atmosphere 1015.0 10 < th dose independent rect. 15 18
309 331.95 wind 9.0 1440 < th dose independent rect. 4 6
323 332.02 wind 1.0 14400 > th dose independent rect. 12 13
324 332.03 wind 1.0 14400 > th dose independent rect. 15 10
326 332.06 humidity 50.0 10 > th dose independent rect. 3 18
331 332.12 wind 9.0 10 < th dose independent rect. 13 9
333 332.14 wind 9.0 90 < th dose dependent rect. 3 18
336 332.15 wind 9.0 10 < th dose dependent rect. 3 6
341 332.18 atmosphere 995.0 90 > th dose dependent rect. 21 16
348 332.27 wind 1.0 14400 < th dose independent rect. 15 5
352 332.32 wind 1.0 90 > th dose independent rect. 9 18
359 332.35 radiation 40.0 90 < th dose dependent rect. 3 18
361 332.37 radiation 40.0 10 < th dose dependent rect. 3 18
368 332.42 precipitation 0.1 10 < th dose independent rect. 13 9
369 332.42 precipitation 0.1 10 < th dose dependent rect. 13 9
372 332.46 wind 1.0 14400 > th dose independent rect. 7 17
374 332.47 wind 3.0 14400 < th dose dependent rect. 15 9
375 332.53 wind 1.0 14400 < th dose independent rect. 12 11
376 332.53 wind 1.0 14400 < th dose independent rect. 12 13
393 332.57 atmosphere 995.0 10 > th dose dependent rect. 9 6
399 332.61 temperature 10.0 10 > th dose independent rect. 13 9
401 332.61 atmosphere 1010.0 10 < th dose independent rect. 13 9
403 332.61 temperature 10.0 10 > th dose independent rect. 22 15
405 332.61 atmosphere 995.0 10 > th dose independent rect. 22 15
406 332.61 wind 1.0 14400 < th dose independent rect. 7 17
409 332.63 atmosphere 1000.0 270 > th dose independent rect. 21 3
410 332.63 radiation 20.0 10 < th dose independent rect. 3 18
411 332.63 temperature 10.0 270 > th dose dependent rect. 24 8
413 332.65 wind 1.0 10 > th dose independent rect. 13 9
414 332.65 wind 5.0 270 < th dose dependent rect. 22 1
444 332.79 atmosphere 995.0 270 > th dose dependent rect. 9 1
485 332.93 wind 9.0 30 < th dose independent rect. 9 18
510 333.05 atmosphere 995.0 90 > th dose dependent rect. 8 6
516 333.12 wind 1.0 14400 < th dose independent rect. 9 16
517 333.13 atmosphere 1000.0 270 > th dose independent rect. 8 3
530 333.18 precipitation 0.1 10 < th dose independent rect. 22 15
531 333.18 temperature 15.0 270 > th dose independent rect. 24 20
532 333.18 precipitation 0.1 10 < th dose dependent rect. 22 15
541 333.26 atmosphere 995.0 270 > th dose dependent rect. 8 3
548 333.31 radiation 1.0 10 > th dose independent rect. 9 6
550 333.31 wind 9.0 10 < th dose independent rect. 3 18
558 333.35 atmosphere 1015.0 270 < th dose independent rect. 23 22
569 333.42 wind 1.0 14400 > th dose independent rect. 9 16
570 333.42 atmosphere 995.0 90 > th dose independent rect. 3 18
575 333.44 radiation 1.0 90 > th dose independent rect. 8 6
582 333.48 radiation 10.0 43200 < th dose dependent rect. 22 6
584 333.49 temperature 10.0 1440 > th dose independent rect. 14 9
587 333.49 temperature 10.0 1440 > th dose independent rect. 23 15
590 333.49 atmosphere 995.0 1440 > th dose independent rect. 23 15
630 333.62 wind 1.0 14400 < th dose independent rect. 15 10
636 333.63 wind 1.0 14400 < th dose independent rect. 9 14
644 333.68 radiation 40.0 90 < th dose independent rect. 13 19
656 333.75 wind 9.0 270 < th dose dependent rect. 21 3
658 333.79 wind 1.0 14400 < th dose dependent rect. 7 17
661 333.81 atmosphere 1000.0 270 > th dose independent rect. 9 1
677 333.90 wind 1.0 14400 < th dose independent rect. 10 10
689 333.92 wind 1.0 14400 < th dose dependent sin 20 NA
708 334.04 wind 1.0 14400 > th dose independent rect. 9 14
711 334.04 wind 9.0 90 < th dose dependent rect. 13 8
717 334.08 temperature 10.0 1440 > th dose independent rect. 4 6
720 334.08 atmosphere 995.0 1440 > th dose independent rect. 4 6
721 334.08 atmosphere 1015.0 1440 < th dose independent rect. 4 6
724 334.08 temperature 10.0 1440 > th dose independent rect. 10 18
733 334.10 atmosphere 995.0 90 > th dose dependent rect. 13 8
772 334.19 wind 1.0 14400 < th dose dependent rect. 9 15
776 334.20 radiation 40.0 10 < th dose independent rect. 24 22
783 334.22 wind 9.0 90 < th dose dependent rect. 21 6
810 334.28 atmosphere 1015.0 90 < th dose dependent rect. 13 8
816 334.32 humidity 50.0 1440 > th dose independent rect. 4 6
867 334.42 atmosphere 995.0 270 > th dose dependent rect. 6 7
870 334.44 atmosphere 1000.0 270 > th dose independent rect. 6 7
877 334.46 precipitation 0.1 270 < th dose independent rect. 11 21
878 334.46 precipitation 0.1 270 < th dose independent rect. 24 21
880 334.46 precipitation 0.1 270 < th dose dependent rect. 11 21
881 334.46 precipitation 0.1 270 < th dose dependent rect. 24 21
896 334.52 humidity 50.0 90 > th dose dependent rect. 3 6
901 334.54 wind 1.0 90 > th dose independent rect. 8 5
902 334.55 wind 1.0 14400 > th dose independent rect. 10 10
918 334.58 radiation 1.0 90 > th dose independent rect. 8 10
932 334.62 atmosphere 1000.0 270 > th dose independent rect. 19 6
933 334.62 wind 1.0 14400 > th dose independent rect. 12 8
935 334.63 temperature 10.0 270 > th dose independent rect. 8 3
936 334.63 humidity 50.0 270 > th dose independent rect. 8 3
938 334.63 atmosphere 1015.0 270 < th dose independent rect. 8 3
946 334.63 temperature 10.0 270 > th dose independent rect. 11 21
975 334.78 wind 1.0 90 > th dose independent rect. 21 6
981 334.79 humidity 50.0 90 > th dose dependent rect. 21 6
982 334.80 precipitation 0.1 270 < th dose independent rect. 8 3
983 334.80 precipitation 0.1 270 < th dose dependent rect. 8 3
984 334.81 atmosphere 995.0 10 > th dose independent rect. 13 9