Os06g0714100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Complex 1 LYR protein family protein.
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Os06g0714100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Complex 1 LYR protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.51 | 0.218 | 11.7 | -0.34 | 0.00642 | -0.378 | 0.267 | -0.167 | -0.274 | 12.9 | 60.1 | 1716 | -- | -- |
| 21.54 | 0.216 | 11.7 | -0.361 | 0.00625 | -0.397 | 0.288 | -- | -0.276 | 13 | 61.08 | 1705 | -- | -- |
| 21.73 | 0.217 | 11.7 | -0.312 | 0.0446 | -0.408 | -- | -0.246 | -0.285 | 8.54 | 63.91 | 1853 | -- | -- |
| 21.81 | 0.217 | 11.7 | -0.336 | 0.054 | -0.431 | -- | -- | -0.293 | 8.34 | 64.37 | 1888 | -- | -- |
| 21.74 | 0.217 | 11.7 | -0.313 | -- | -0.394 | -- | -0.274 | -0.284 | -- | 64.2 | 1759 | -- | -- |
| 24.91 | 0.234 | 11.7 | -0.354 | 0.0642 | -- | 0.257 | -- | -0.248 | 14.9 | -- | -- | -- | -- |
| 25.08 | 0.235 | 11.7 | -0.348 | 0.0744 | -- | -- | -- | -0.246 | 16.5 | -- | -- | -- | -- |
| 21.85 | 0.218 | 11.7 | -0.342 | -- | -0.417 | -- | -- | -0.289 | -- | 64.37 | 1746 | -- | -- |
| 24.83 | 0.232 | 11.7 | -- | 0.0732 | -0.457 | -- | -- | -0.258 | 8.91 | 64.62 | 1941 | -- | -- |
| 25.38 | 0.235 | 11.7 | -0.351 | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
| 28.28 | 0.249 | 11.7 | -- | 0.0809 | -- | -- | -- | -0.207 | 16.4 | -- | -- | -- | -- |
| 24.56 | 0.231 | 11.7 | -- | -- | -0.528 | -- | -- | -0.286 | -- | 81 | 1720 | -- | -- |
| 28.63 | 0.25 | 11.7 | -- | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 3 | 20.72 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 14 | 20.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 5 | 11 |
| 37 | 20.93 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 39 | 20.96 | humidity | 60 | 1440 | > th | dose dependent | rect. | 24 | 16 |
| 47 | 21.01 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 134 | 21.20 | humidity | 70 | 1440 | > th | dose independent | sin | 4 | NA |
| 138 | 21.20 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 16 |
| 147 | 21.22 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 167 | 21.27 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 8 |
| 204 | 21.31 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 212 | 21.32 | humidity | 60 | 1440 | > th | dose dependent | sin | 4 | NA |
| 279 | 21.39 | humidity | 70 | 1440 | < th | dose independent | sin | 4 | NA |
| 323 | 21.43 | radiation | 10 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 366 | 21.47 | humidity | 90 | 1440 | < th | dose dependent | sin | 6 | NA |
| 373 | 21.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 374 | 21.49 | humidity | 70 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 594 | 21.65 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 613 | 21.66 | humidity | 60 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 647 | 21.69 | radiation | 10 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 707 | 21.72 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 755 | 21.75 | humidity | 60 | 1440 | > th | dose dependent | no | NA | NA |
| 811 | 21.77 | humidity | 60 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 842 | 21.79 | wind | 5 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 843 | 21.79 | radiation | 10 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 854 | 21.79 | humidity | 60 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 886 | 21.80 | humidity | 60 | 1440 | > th | dose dependent | rect. | 13 | 23 |