Os06g0713100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1640 family protein.
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Os06g0713100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1640 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.65 | 0.317 | 9.91 | -0.663 | 0.629 | 0.66 | 0.397 | 0.396 | -0.244 | 10.8 | 82.34 | 1198 | -- | -- |
| 45.78 | 0.315 | 9.91 | -0.701 | 0.647 | 0.699 | 0.352 | -- | -0.241 | 10.8 | 81 | 1171 | -- | -- |
| 46.23 | 0.317 | 9.91 | -0.668 | 0.63 | 0.658 | -- | 0.246 | -0.242 | 10.7 | 81 | 1186 | -- | -- |
| 46.26 | 0.317 | 9.91 | -0.686 | 0.64 | 0.69 | -- | -- | -0.241 | 10.7 | 81 | 1173 | -- | -- |
| 63.87 | 0.372 | 9.94 | -0.557 | -- | 0.513 | -- | 0.585 | -0.252 | -- | 86.97 | 1566 | -- | -- |
| 56.02 | 0.351 | 9.92 | -0.585 | 0.513 | -- | 0.235 | -- | -0.268 | 10.3 | -- | -- | -- | -- |
| 56.24 | 0.351 | 9.92 | -0.576 | 0.512 | -- | -- | -- | -0.268 | 10.3 | -- | -- | -- | -- |
| 63.85 | 0.372 | 9.93 | -0.645 | -- | 0.556 | -- | -- | -0.257 | -- | 85.04 | 1526 | -- | -- |
| 58.02 | 0.355 | 9.91 | -- | 0.622 | 0.618 | -- | -- | -0.222 | 10.8 | 208.9 | 1199 | -- | -- |
| 72.15 | 0.397 | 9.93 | -0.584 | -- | -- | -- | -- | -0.269 | -- | -- | -- | -- | -- |
| 64.98 | 0.377 | 9.91 | -- | 0.515 | -- | -- | -- | -0.204 | 10.3 | -- | -- | -- | -- |
| 74.54 | 0.402 | 9.92 | -- | -- | 0.501 | -- | -- | -0.222 | -- | 111.9 | 1539 | -- | -- |
| 81.14 | 0.42 | 9.92 | -- | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.85 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 2 | 46.11 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 3 | 46.14 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 7 | 46.28 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 13 | 46.47 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 10 | 18 |
| 15 | 46.49 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 41 | 46.82 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 53 | 46.92 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 80 | 47.07 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 85 | 47.08 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 89 | 47.09 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 99 | 47.13 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 117 | 47.19 | humidity | 50.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 127 | 47.22 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 135 | 47.27 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 149 | 47.30 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 168 | 47.34 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 196 | 47.36 | humidity | 80.0 | 720 | > th | dose independent | rect. | 7 | 15 |
| 199 | 47.37 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 218 | 47.45 | humidity | 80.0 | 720 | > th | dose independent | rect. | 18 | 3 |
| 228 | 47.47 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 230 | 47.47 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 234 | 47.47 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 19 |
| 236 | 47.48 | humidity | 80.0 | 1440 | < th | dose dependent | no | NA | NA |
| 241 | 47.49 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 243 | 47.49 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 247 | 47.49 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 258 | 47.50 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 262 | 47.51 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 287 | 47.53 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 19 | 9 |
| 343 | 47.58 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 360 | 47.60 | humidity | 80.0 | 720 | > th | dose independent | rect. | 5 | 17 |
| 363 | 47.60 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 370 | 47.60 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 412 | 47.65 | humidity | 80.0 | 720 | > th | dose independent | rect. | 24 | 22 |
| 419 | 47.65 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 9 | 17 |
| 420 | 47.65 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 446 | 47.67 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 463 | 47.68 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 464 | 47.68 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 465 | 47.68 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 468 | 47.68 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 479 | 47.69 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 482 | 47.69 | humidity | 50.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 504 | 47.70 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 516 | 47.71 | humidity | 80.0 | 720 | > th | dose independent | rect. | 7 | 19 |
| 608 | 47.76 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 670 | 47.80 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 689 | 47.81 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 2 | 2 |
| 690 | 47.81 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 702 | 47.82 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 752 | 47.85 | humidity | 70.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 755 | 47.85 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 782 | 47.86 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 2 |
| 783 | 47.86 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 784 | 47.86 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 815 | 47.88 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 841 | 47.90 | wind | 9.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 858 | 47.91 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 859 | 47.91 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 874 | 47.92 | humidity | 80.0 | 720 | > th | dose independent | rect. | 5 | 21 |
| 946 | 47.96 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 950 | 47.96 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 956 | 47.96 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 968 | 47.96 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 970 | 47.97 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 6 |
| 987 | 47.97 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 6 |