Os06g0712700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MADS-box protein SPW1.
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Os06g0712700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MADS-box protein SPW1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.92 | 0.412 | 11.6 | 0.25 | 0.358 | 1.3 | -0.173 | -5.57 | -0.462 | 7.88 | 25.97 | 1268 | -- | -- |
| 86.97 | 0.434 | 11.4 | 1.61 | 0.359 | 0.822 | -0.144 | -- | -0.27 | 7.47 | 22.65 | 1275 | -- | -- |
| 76.99 | 0.409 | 11.6 | 0.205 | 0.361 | 1.34 | -- | -5.78 | -0.454 | 7.73 | 26.17 | 1268 | -- | -- |
| 85.74 | 0.431 | 11.4 | 1.6 | 0.32 | 0.733 | -- | -- | -0.159 | 7.68 | 25.46 | 1319 | -- | -- |
| 83.63 | 0.426 | 11.6 | 0.312 | -- | 1.25 | -- | -5.28 | -0.427 | -- | 26.16 | 1304 | -- | -- |
| 106.29 | 0.483 | 11.4 | 1.87 | 0.349 | -- | -0.124 | -- | -0.0992 | 6.5 | -- | -- | -- | -- |
| 106.33 | 0.483 | 11.4 | 1.87 | 0.349 | -- | -- | -- | -0.0988 | 6.51 | -- | -- | -- | -- |
| 91.42 | 0.445 | 11.4 | 1.63 | -- | 0.727 | -- | -- | -0.177 | -- | 25.38 | 1308 | -- | -- |
| 111.78 | 0.492 | 11.5 | -- | 0.273 | 1.73 | -- | -- | -0.715 | 6.29 | 16.08 | 24563 | -- | -- |
| 112.67 | 0.496 | 11.4 | 1.88 | -- | -- | -- | -- | -0.0916 | -- | -- | -- | -- | -- |
| 198.74 | 0.659 | 11.4 | -- | 0.374 | -- | -- | -- | -0.307 | 6.22 | -- | -- | -- | -- |
| 111.93 | 0.493 | 11.6 | -- | -- | 1.6 | -- | -- | -0.817 | -- | 13.62 | 40328 | -- | -- |
| 206.01 | 0.67 | 11.4 | -- | -- | -- | -- | -- | -0.3 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 4 | 77.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 16 | 77.69 | temperature | 25 | 1440 | > th | dose dependent | sin | 14 | NA |
| 69 | 78.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 88 | 78.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 129 | 79.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 130 | 79.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 19 |
| 144 | 79.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 164 | 79.33 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 172 | 79.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 210 | 79.55 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 237 | 79.74 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 22 |
| 251 | 79.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 268 | 79.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 278 | 79.94 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 288 | 80.03 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 343 | 80.15 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 441 | 80.18 | temperature | 30 | 1440 | > th | dose independent | sin | 22 | NA |
| 455 | 80.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 461 | 80.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 462 | 80.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 467 | 80.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 468 | 80.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 470 | 80.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 495 | 80.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 507 | 80.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 511 | 80.34 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 561 | 80.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 570 | 80.37 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 580 | 80.38 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 606 | 80.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 658 | 80.43 | temperature | 30 | 1440 | < th | dose independent | sin | 22 | NA |
| 816 | 80.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 825 | 80.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 836 | 80.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 847 | 80.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 969 | 81.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 20 |
| 995 | 81.94 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 2 |