Os06g0712400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF544 family protein.
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Os06g0712400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF544 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.08 | 0.176 | 10.2 | 0.894 | 0.0534 | 1.24 | 0.189 | -0.11 | 0.219 | 19.6 | 28.53 | 252 | -- | -- |
| 14.09 | 0.175 | 10.2 | 0.878 | 0.0532 | 1.25 | 0.202 | -- | 0.217 | 19.4 | 28.43 | 251 | -- | -- |
| 14.16 | 0.175 | 10.2 | 0.9 | 0.0574 | 1.25 | -- | -0.156 | 0.224 | 18.7 | 28.52 | 251 | -- | -- |
| 14.18 | 0.175 | 10.2 | 0.875 | 0.0568 | 1.26 | -- | -- | 0.22 | 18 | 28.43 | 242 | -- | -- |
| 14.26 | 0.176 | 10.2 | 0.885 | -- | 1.21 | -- | -0.128 | 0.212 | -- | 28.23 | 240 | -- | -- |
| 35.88 | 0.281 | 10.2 | 0.55 | 0.318 | -- | 0.0639 | -- | -0.0504 | 3.87 | -- | -- | -- | -- |
| 35.89 | 0.281 | 10.2 | 0.549 | 0.318 | -- | -- | -- | -0.0508 | 3.9 | -- | -- | -- | -- |
| 14.28 | 0.176 | 10.2 | 0.864 | -- | 1.22 | -- | -- | 0.211 | -- | 28.15 | 232 | -- | -- |
| 32.03 | 0.264 | 10.2 | -- | 0.0609 | 0.88 | -- | -- | 0.0461 | 5.34 | 29 | 184 | -- | -- |
| 41.45 | 0.301 | 10.2 | 0.562 | -- | -- | -- | -- | -0.0423 | -- | -- | -- | -- | -- |
| 43.84 | 0.31 | 10.3 | -- | 0.329 | -- | -- | -- | -0.112 | 3.88 | -- | -- | -- | -- |
| 32.17 | 0.264 | 10.2 | -- | -- | 0.927 | -- | -- | 0.0524 | -- | 29.33 | 189 | -- | -- |
| 49.79 | 0.329 | 10.3 | -- | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 2 | 14.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 6 | 14.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 8 | 14.32 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 10 | 14.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 35 | 15.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 7 |
| 36 | 15.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 50 | 15.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 71 | 15.31 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 114 | 15.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 124 | 15.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 151 | 15.61 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 172 | 15.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 253 | 15.75 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 267 | 15.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 275 | 15.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 624 | 16.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 730 | 16.19 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 836 | 16.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |