Os06g0712200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0712200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 101.46 | 0.473 | 11.6 | -1.4 | 1.75 | -1.04 | 0.416 | -1.15 | -0.633 | 8.95 | 62.01 | 4074 | -- | -- |
| 103.33 | 0.473 | 11.6 | -1.38 | 1.77 | -1.12 | 0.369 | -- | -0.601 | 8.98 | 62 | 4071 | -- | -- |
| 102.05 | 0.47 | 11.6 | -1.39 | 1.75 | -1.04 | -- | -1.11 | -0.63 | 8.96 | 62 | 4074 | -- | -- |
| 103.49 | 0.474 | 11.6 | -1.33 | 1.76 | -1.09 | -- | -- | -0.59 | 8.97 | 64 | 4067 | -- | -- |
| 264.47 | 0.757 | 11.7 | -1.33 | -- | -1.26 | -- | -0.489 | -0.593 | -- | 62.19 | 4380 | -- | -- |
| 125.45 | 0.525 | 11.7 | -1.34 | 1.73 | -- | 0.262 | -- | -0.887 | 8.8 | -- | -- | -- | -- |
| 125.68 | 0.525 | 11.7 | -1.33 | 1.73 | -- | -- | -- | -0.886 | 8.8 | -- | -- | -- | -- |
| 264.91 | 0.758 | 11.7 | -1.32 | -- | -1.3 | -- | -- | -0.572 | -- | 62.16 | 4379 | -- | -- |
| 128.32 | 0.528 | 11.7 | -- | 1.68 | -1.32 | -- | -- | -0.73 | 8.76 | 63 | 28838 | -- | -- |
| 294.83 | 0.802 | 11.8 | -1.33 | -- | -- | -- | -- | -0.873 | -- | -- | -- | -- | -- |
| 172.14 | 0.614 | 11.7 | -- | 1.72 | -- | -- | -- | -0.739 | 8.86 | -- | -- | -- | -- |
| 293.21 | 0.798 | 11.7 | -- | -- | -1.5 | -- | -- | -0.732 | -- | 63 | 28841 | -- | -- |
| 341.21 | 0.862 | 11.7 | -- | -- | -- | -- | -- | -0.726 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.61 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 3 | 97.21 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 4 | 97.59 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 5 | 98.46 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 7 | 98.97 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 8 | 99.07 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 14 | 99.62 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 17 | 100.09 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 26 | 100.48 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 32 | 100.56 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 40 | 100.73 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 43 | 100.80 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 46 | 100.86 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 49 | 100.93 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 65 | 101.20 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 68 | 101.25 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 69 | 101.26 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 73 | 101.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 74 | 101.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 77 | 101.33 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 82 | 101.35 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 83 | 101.35 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 84 | 101.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 89 | 101.42 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 6 |
| 90 | 101.42 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 6 |
| 97 | 101.47 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 150 | 101.83 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 13 |
| 175 | 102.04 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 5 |
| 182 | 102.09 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 186 | 102.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 197 | 102.17 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 202 | 102.21 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 23 | NA |
| 263 | 102.51 | wind | 1.0 | 14400 | > th | dose independent | rect. | 3 | 3 |
| 267 | 102.53 | wind | 1.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 299 | 102.61 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 333 | 102.71 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 22 | NA |
| 337 | 102.73 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 18 | 21 |
| 339 | 102.75 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 22 | NA |
| 340 | 102.75 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 22 | NA |
| 359 | 102.82 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 363 | 102.84 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 2 | NA |
| 381 | 102.90 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 2 | 13 |
| 390 | 102.91 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 4 | 11 |
| 442 | 103.01 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 513 | 103.20 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 18 | 20 |
| 526 | 103.26 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 11 | 9 |
| 527 | 103.26 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 11 | 13 |
| 529 | 103.26 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 11 | 18 |
| 536 | 103.27 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 11 | 15 |
| 548 | 103.31 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 1 | NA |
| 896 | 103.92 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 905 | 103.96 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 22 |
| 943 | 104.04 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 949 | 104.05 | humidity | 60.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 975 | 104.09 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 990 | 104.12 | humidity | 60.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 992 | 104.12 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 6 |
| 997 | 104.13 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 11 |