Os06g0711700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
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Os06g0711700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose oxidase, central domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.11 | 0.355 | 12.9 | -0.294 | 0.82 | 0.988 | 0.597 | 1.08 | -0.42 | 10.5 | 24.06 | 369 | -- | -- |
| 58.5 | 0.356 | 12.9 | -0.137 | 0.814 | 0.853 | 0.61 | -- | -0.394 | 10.4 | 24.34 | 370 | -- | -- |
| 58.37 | 0.356 | 12.9 | -0.292 | 0.81 | 1.03 | -- | 1.26 | -0.427 | 10.3 | 23.66 | 409 | -- | -- |
| 59.99 | 0.361 | 12.9 | -0.119 | 0.821 | 0.845 | -- | -- | -0.389 | 10.3 | 24.3 | 371 | -- | -- |
| 88.7 | 0.439 | 12.9 | -0.222 | -- | 1.19 | -- | 1.08 | -0.342 | -- | 27.6 | 694 | -- | -- |
| 68.51 | 0.388 | 12.9 | -0.349 | 0.847 | -- | 0.562 | -- | -0.543 | 10 | -- | -- | -- | -- |
| 69.71 | 0.391 | 12.9 | -0.328 | 0.846 | -- | -- | -- | -0.542 | 9.92 | -- | -- | -- | -- |
| 90.09 | 0.442 | 12.9 | -0.0172 | -- | 1.15 | -- | -- | -0.298 | -- | 28.27 | 685 | -- | -- |
| 60.31 | 0.362 | 12.9 | -- | 0.817 | 0.885 | -- | -- | -0.37 | 10.3 | 24.3 | 371 | -- | -- |
| 112.68 | 0.496 | 12.9 | -0.338 | -- | -- | -- | -- | -0.542 | -- | -- | -- | -- | -- |
| 72.55 | 0.398 | 12.9 | -- | 0.848 | -- | -- | -- | -0.506 | 9.95 | -- | -- | -- | -- |
| 90.09 | 0.442 | 12.9 | -- | -- | 1.16 | -- | -- | -0.296 | -- | 28.26 | 687 | -- | -- |
| 115.69 | 0.502 | 12.9 | -- | -- | -- | -- | -- | -0.505 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.19 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 3 | 54.35 | wind | 3 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 4 | 54.41 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 13 | 54.67 | wind | 3 | 14400 | < th | dose dependent | sin | 12 | NA |
| 30 | 54.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 8 |
| 46 | 55.05 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 63 | 55.20 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 68 | 55.23 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 8 |
| 72 | 55.25 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 77 | 55.26 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 86 | 55.30 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 95 | 55.33 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 102 | 55.37 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 109 | 55.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 7 |
| 134 | 55.52 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 7 |
| 154 | 55.59 | wind | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 166 | 55.64 | wind | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 209 | 55.76 | wind | 1 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 211 | 55.76 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 17 |
| 223 | 55.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 231 | 55.80 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 238 | 55.82 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 17 |
| 239 | 55.82 | wind | 1 | 14400 | < th | dose independent | rect. | 18 | 19 |
| 241 | 55.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 5 |
| 292 | 55.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 385 | 56.03 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 392 | 56.04 | wind | 3 | 14400 | < th | dose dependent | no | NA | NA |
| 398 | 56.05 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 434 | 56.10 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 22 |
| 446 | 56.11 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 450 | 56.12 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 22 |
| 515 | 56.19 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 557 | 56.23 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 573 | 56.25 | humidity | 70 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 660 | 56.35 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 735 | 56.42 | wind | 1 | 14400 | > th | dose independent | no | NA | NA |
| 749 | 56.43 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 751 | 56.43 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 753 | 56.44 | wind | 1 | 14400 | < th | dose independent | no | NA | NA |
| 791 | 56.48 | wind | 1 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 809 | 56.50 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 8 |
| 814 | 56.51 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 833 | 56.52 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 859 | 56.54 | temperature | 25 | 270 | < th | dose dependent | sin | 8 | NA |
| 864 | 56.55 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 891 | 56.57 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 8 |
| 922 | 56.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 970 | 56.65 | wind | 3 | 14400 | < th | dose independent | sin | 5 | NA |
| 975 | 56.66 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 7 |