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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0709300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : FAR1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0454) R2 : 0.017
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.269 (0.0957) R2dN8 : 0.022 R2N8 : 0.017
σ : 0.856
deviance : 336.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
317.86 0.838 3.13 0.565 0.12 -0.0861 -0.494 8.03 -0.199 8.33 31.2 154 -- --
319.51 0.833 3.17 0.0265 0.107 0.722 -0.257 -- -0.213 8.52 30.81 156 -- --
318.53 0.831 3.12 0.562 0.136 -0.077 -- 8.23 -0.195 7.59 31.17 170 -- --
319.73 0.833 3.18 0.021 0.129 0.825 -- -- -0.192 8.45 30.94 156 -- --
319.41 0.832 3.13 0.569 -- -0.137 -- 8.28 -0.199 -- 31.17 157 -- --
333.96 0.857 3.2 0.122 0.0486 -- 0.834 -- -0.258 18.7 -- -- -- --
334.9 0.857 3.2 0.112 0.128 -- -- -- -0.254 14.5 -- -- -- --
320.6 0.834 3.19 0.0259 -- 0.791 -- -- -0.196 -- 30.99 155 -- --
319.67 0.833 3.18 -- 0.139 0.851 -- -- -0.195 7.45 30.95 155 -- --
335.87 0.856 3.2 0.107 -- -- -- -- -0.257 -- -- -- -- --
335.23 0.856 3.2 -- 0.126 -- -- -- -0.266 14.4 -- -- -- --
320.62 0.834 3.19 -- -- 0.794 -- -- -0.198 -- 30.97 155 -- --
336.17 0.856 3.2 -- -- -- -- -- -0.269 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 315.84 radiation 30 10 > th dose independent rect. 15 1
17 317.01 atmosphere 1000 10 < th dose independent rect. 14 2
19 317.14 atmosphere 1000 90 < th dose independent rect. 14 1
30 317.26 temperature 30 270 < th dose independent rect. 3 12
31 318.05 temperature 30 10 > th dose independent rect. 11 7
32 318.10 temperature 30 270 < th dose independent rect. 10 12
37 318.49 temperature 30 720 < th dose independent rect. 10 5
40 318.94 temperature 30 270 < th dose independent rect. 17 22
43 319.10 temperature 30 720 < th dose independent rect. 19 20
48 319.41 radiation 30 270 > th dose independent rect. 15 18
49 319.42 temperature 30 720 < th dose independent rect. 3 8
51 319.51 temperature 30 270 > th dose independent sin 1 NA
54 319.57 temperature 30 270 < th dose independent sin 2 NA
56 319.61 temperature 30 10 > th dose independent rect. 14 4
58 319.65 temperature 30 270 > th dose independent rect. 9 9
78 319.79 temperature 30 270 > th dose independent rect. 17 22
80 319.83 radiation 30 10 > th dose dependent rect. 15 1
100 319.91 temperature 30 10 > th dose independent rect. 14 2
105 320.01 temperature 30 270 < th dose independent rect. 2 23
107 320.07 temperature 30 10 > th dose independent rect. 16 1
166 320.53 temperature 30 270 < th dose independent rect. 24 23
167 320.55 temperature 30 270 < th dose independent rect. 10 23
172 320.64 temperature 30 270 < th dose independent rect. 8 23
204 320.68 wind 1 720 > th dose independent rect. 2 20
208 320.71 temperature 30 10 < th dose independent rect. 11 14
210 320.73 temperature 30 270 > th dose independent no NA NA
311 320.88 temperature 30 270 < th dose independent no NA NA
312 320.89 temperature 30 720 < th dose independent rect. 6 9
313 320.90 temperature 10 720 > th dose dependent rect. 7 10
321 320.94 temperature 30 720 > th dose independent rect. 10 2
322 320.96 temperature 30 720 > th dose independent rect. 8 4
354 321.01 temperature 30 720 > th dose independent sin 6 NA
355 321.03 temperature 20 720 > th dose dependent rect. 15 1
421 321.21 atmosphere 1000 10 < th dose independent rect. 11 15
442 321.30 temperature 30 720 < th dose independent sin 6 NA
443 321.30 wind 3 1440 < th dose dependent rect. 11 1
444 321.31 atmosphere 1000 30 < th dose independent rect. 11 6
445 321.31 temperature 30 270 < th dose independent rect. 6 23
446 321.31 temperature 25 720 > th dose dependent rect. 6 10
456 321.36 wind 3 1440 < th dose dependent rect. 17 19
498 321.43 wind 3 1440 < th dose dependent rect. 14 22
518 321.45 wind 3 1440 < th dose dependent rect. 20 19
523 321.47 temperature 30 10 > th dose independent rect. 11 5
525 321.47 wind 3 1440 < th dose dependent rect. 20 17
532 321.49 temperature 30 270 > th dose dependent sin 4 NA
566 321.57 temperature 30 270 < th dose independent rect. 3 19
571 321.57 wind 3 1440 < th dose dependent rect. 7 23
587 321.62 temperature 30 270 > th dose dependent rect. 17 20
594 321.67 radiation 30 720 > th dose independent rect. 8 1
598 321.67 temperature 30 270 > th dose dependent rect. 17 22
602 321.68 wind 3 1440 < th dose dependent rect. 1 23
605 321.70 radiation 30 720 > th dose independent sin 11 NA
653 321.82 temperature 30 720 > th dose dependent rect. 11 1
682 321.87 temperature 30 720 > th dose dependent rect. 8 4
721 321.94 wind 3 720 < th dose dependent rect. 5 22
735 321.97 temperature 30 270 > th dose dependent sin 9 NA
758 321.99 wind 7 10 > th dose dependent rect. 16 1
773 322.03 wind 3 1440 < th dose dependent rect. 10 23
781 322.05 wind 3 1440 < th dose dependent no NA NA
816 322.10 wind 1 720 > th dose independent rect. 2 13
829 322.14 radiation 30 720 > th dose dependent rect. 15 18
900 322.26 radiation 10 10 < th dose dependent rect. 8 1
985 322.35 temperature 25 720 > th dose independent rect. 15 1