Os06g0708900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0708900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.27 | 0.158 | 10.8 | 0.621 | 0.321 | -0.19 | 0.231 | 1.43 | 0.214 | 10.9 | 19.46 | 1678 | -- | -- |
| 13.24 | 0.169 | 10.9 | 0.377 | 0.315 | -0.199 | 0.227 | -- | 0.157 | 10.9 | 8.251 | 47520 | -- | -- |
| 11.48 | 0.158 | 10.8 | 0.642 | 0.326 | -0.195 | -- | 1.49 | 0.216 | 10.9 | 18.86 | 1663 | -- | -- |
| 13.43 | 0.171 | 10.9 | 0.381 | 0.32 | -0.196 | -- | -- | 0.155 | 10.8 | 1.259 | 47520 | -- | -- |
| 17.33 | 0.194 | 10.8 | 0.656 | -- | -0.279 | -- | 1.42 | 0.231 | -- | 19.61 | 2262 | -- | -- |
| 13.6 | 0.173 | 10.9 | 0.167 | 0.325 | -- | 0.226 | -- | 0.0727 | 10.8 | -- | -- | -- | -- |
| 13.82 | 0.174 | 10.9 | 0.177 | 0.324 | -- | -- | -- | 0.0735 | 10.9 | -- | -- | -- | -- |
| 19.67 | 0.207 | 10.9 | 0.314 | -- | -0.169 | -- | -- | 0.137 | -- | 18.32 | 23892 | -- | -- |
| 14.42 | 0.177 | 10.9 | -- | 0.325 | 0.0752 | -- | -- | 0.0313 | 10.8 | -6.452 | 47520 | -- | -- |
| 20.32 | 0.211 | 10.9 | 0.17 | -- | -- | -- | -- | 0.0713 | -- | -- | -- | -- | -- |
| 14.64 | 0.179 | 10.9 | -- | 0.323 | -- | -- | -- | 0.0538 | 10.8 | -- | -- | -- | -- |
| 20.47 | 0.211 | 10.9 | -- | -- | 0.169 | -- | -- | 0.0499 | -- | 26.1 | 47520 | -- | -- |
| 21.09 | 0.214 | 10.9 | -- | -- | -- | -- | -- | 0.0525 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.99 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 2 | 11.00 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 8 | 11.04 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 12 | 11.06 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 17 | 11.08 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 25 | 11.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 36 | 11.10 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 38 | 11.10 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 40 | 11.10 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 7 |
| 48 | 11.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 52 | 11.11 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 99 | 11.13 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 101 | 11.14 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 137 | 11.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 151 | 11.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 154 | 11.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 18 |
| 167 | 11.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 170 | 11.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 187 | 11.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 191 | 11.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 225 | 11.21 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 238 | 11.21 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 244 | 11.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 12 |
| 259 | 11.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 276 | 11.22 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 283 | 11.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 17 |
| 292 | 11.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 318 | 11.23 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 325 | 11.24 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 326 | 11.24 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 369 | 11.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 424 | 11.26 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 425 | 11.26 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 483 | 11.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 506 | 11.28 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 508 | 11.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 575 | 11.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 657 | 11.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 713 | 11.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 718 | 11.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 735 | 11.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 806 | 11.33 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 809 | 11.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 894 | 11.35 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 896 | 11.35 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 898 | 11.35 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |