Os06g0708700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nodulin-like protein.
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Os06g0708700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nodulin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.34 | 0.518 | 10.6 | -1.89 | 3.23 | -0.617 | 0.837 | 1.55 | 0.209 | 17.4 | -4.633 | 1278 | -- | -- |
| 125.5 | 0.522 | 10.6 | -2.03 | 3.23 | -0.591 | 0.831 | -- | 0.206 | 17.3 | -0.579 | 1349 | -- | -- |
| 123 | 0.517 | 10.6 | -1.89 | 3.26 | -0.64 | -- | 1.68 | 0.216 | 17.4 | -1.824 | 1238 | -- | -- |
| 126.76 | 0.524 | 10.6 | -2.07 | 3.19 | -0.533 | -- | -- | 0.165 | 17.3 | -53.23 | 1373 | -- | -- |
| 659.48 | 1.2 | 10.6 | -2.14 | -- | -0.922 | -- | 1.38 | 0.0196 | -- | 45.17 | 1375 | -- | -- |
| 134.95 | 0.545 | 10.6 | -2.16 | 3.22 | -- | 0.827 | -- | 0.019 | 17.2 | -- | -- | -- | -- |
| 136.66 | 0.547 | 10.6 | -2.16 | 3.23 | -- | -- | -- | 0.023 | 17.2 | -- | -- | -- | -- |
| 659.99 | 1.2 | 10.6 | -2.26 | -- | -0.925 | -- | -- | 0.0202 | -- | 46.23 | 1382 | -- | -- |
| 237.52 | 0.718 | 10.5 | -- | 3.23 | -0.617 | -- | -- | 0.35 | 17.3 | 9.991 | 1340 | -- | -- |
| 682.01 | 1.22 | 10.6 | -2.27 | -- | -- | -- | -- | -0.0582 | -- | -- | -- | -- | -- |
| 259.44 | 0.753 | 10.6 | -- | 3.27 | -- | -- | -- | 0.263 | 17.2 | -- | -- | -- | -- |
| 777.8 | 1.3 | 10.5 | -- | -- | -0.989 | -- | -- | 0.503 | -- | 9.994 | 1375 | -- | -- |
| 818.11 | 1.34 | 10.5 | -- | -- | -- | -- | -- | 0.194 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.44 | radiation | 40 | 1440 | < th | dose independent | rect. | 15 | 18 |
| 2 | 117.88 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 14 |
| 3 | 117.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 6 | 117.97 | radiation | 10 | 90 | < th | dose dependent | rect. | 6 | 9 |
| 12 | 118.11 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 13 |
| 22 | 118.41 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 11 |
| 26 | 118.45 | radiation | 20 | 90 | < th | dose dependent | rect. | 6 | 11 |
| 53 | 118.92 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 13 |
| 75 | 119.23 | temperature | 15 | 90 | > th | dose independent | rect. | 19 | 11 |
| 81 | 119.30 | humidity | 80 | 10 | > th | dose independent | rect. | 7 | 8 |
| 105 | 119.51 | radiation | 30 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 117 | 119.64 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 119 | 119.65 | humidity | 80 | 10 | > th | dose independent | rect. | 23 | 16 |
| 123 | 119.66 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 128 | 119.69 | humidity | 80 | 1440 | < th | dose independent | sin | 5 | NA |
| 129 | 119.69 | radiation | 30 | 720 | < th | dose independent | rect. | 21 | 12 |
| 154 | 119.90 | humidity | 80 | 1440 | > th | dose independent | sin | 4 | NA |
| 157 | 119.90 | humidity | 50 | 10 | > th | dose dependent | rect. | 22 | 21 |
| 158 | 119.91 | radiation | 40 | 1440 | < th | dose independent | sin | 11 | NA |
| 159 | 119.92 | humidity | 50 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 165 | 119.97 | radiation | 30 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 171 | 120.00 | radiation | 40 | 1440 | > th | dose dependent | rect. | 14 | 21 |
| 178 | 120.05 | radiation | 30 | 720 | < th | dose independent | rect. | 6 | 3 |
| 180 | 120.05 | radiation | 40 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 181 | 120.05 | radiation | 10 | 1440 | > th | dose dependent | rect. | 6 | 4 |
| 183 | 120.05 | radiation | 10 | 1440 | > th | dose dependent | rect. | 17 | 17 |
| 202 | 120.10 | radiation | 40 | 1440 | < th | dose independent | rect. | 8 | 2 |
| 204 | 120.10 | radiation | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 207 | 120.12 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 3 |
| 208 | 120.12 | radiation | 40 | 1440 | < th | dose independent | rect. | 2 | 8 |
| 215 | 120.14 | humidity | 80 | 1440 | < th | dose dependent | sin | 7 | NA |
| 229 | 120.20 | radiation | 40 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 249 | 120.21 | radiation | 30 | 1440 | > th | dose dependent | sin | 11 | NA |
| 252 | 120.23 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 281 | 120.34 | humidity | 70 | 10 | > th | dose dependent | rect. | 23 | 16 |
| 290 | 120.39 | radiation | 20 | 90 | < th | dose independent | rect. | 6 | 13 |
| 313 | 120.45 | radiation | 30 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 426 | 120.64 | radiation | 40 | 90 | < th | dose independent | rect. | 6 | 13 |
| 484 | 120.72 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 503 | 120.76 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 518 | 120.82 | radiation | 40 | 720 | < th | dose independent | rect. | 21 | 21 |
| 625 | 121.03 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 20 |
| 639 | 121.10 | radiation | 20 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 715 | 121.27 | radiation | 1 | 90 | < th | dose independent | rect. | 6 | 9 |
| 719 | 121.28 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 738 | 121.30 | radiation | 1 | 90 | < th | dose independent | rect. | 7 | 6 |
| 816 | 121.40 | radiation | 40 | 720 | < th | dose independent | rect. | 5 | 12 |
| 870 | 121.48 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 880 | 121.51 | temperature | 15 | 720 | > th | dose independent | rect. | 18 | 3 |
| 896 | 121.55 | radiation | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 928 | 121.59 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 974 | 121.63 | radiation | 20 | 90 | < th | dose independent | rect. | 22 | 21 |