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Os06g0708000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : MAP kinase homolog.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0223) R2 : 0.407
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.17 (0.0659) R2dE : 0.412 R2E : 0.399
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.103 (0.0473) R2dN8 : 0.00805 R2N8 : -0.00505
σ : 0.419
deviance : 81.08
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C
peak time of C : --
E
wheather : temperature
threshold : 25.05
memory length : 1260
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.1 0.402 11 0.572 0.326 -1.41 0.442 2.83 0.251 17.7 25.2 1187 -- --
75.87 0.406 11.1 -0.0569 0.327 -1.1 0.232 -- 0.0594 17.2 25.36 1216 -- --
73.57 0.399 11 0.569 0.324 -1.4 -- 2.81 0.25 17.6 25.23 1194 -- --
75.92 0.406 11.1 -0.122 0.304 -1.07 -- -- 0.0684 16.9 25.3 1255 -- --
78.63 0.413 11 0.615 -- -1.43 -- 2.77 0.281 -- 25 1239 -- --
119.01 0.511 11.1 -0.468 0.447 -- 0.405 -- -0.0341 15.8 -- -- -- --
119.49 0.512 11.1 -0.462 0.449 -- -- -- -0.0318 15.7 -- -- -- --
80.83 0.419 11.1 -0.0885 -- -1.12 -- -- 0.0954 -- 25.2 1260 -- --
76.25 0.407 11.1 -- 0.308 -1.1 -- -- 0.0928 16.7 25.24 1289 -- --
130.66 0.534 11.1 -0.481 -- -- -- -- -0.0438 -- -- -- -- --
125.11 0.523 11.1 -- 0.458 -- -- -- 0.0196 15.6 -- -- -- --
81.08 0.419 11.1 -- -- -1.17 -- -- 0.103 -- 25.05 1260 -- --
136.75 0.546 11.1 -- -- -- -- -- 0.00955 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.35 temperature 25 720 > th dose dependent rect. 17 17
3 74.64 radiation 1 720 > th dose independent rect. 17 13
4 74.74 temperature 25 1440 > th dose dependent rect. 13 22
7 74.84 temperature 25 1440 > th dose dependent rect. 9 15
20 74.93 temperature 25 720 > th dose dependent sin 11 NA
21 74.93 temperature 25 1440 > th dose dependent sin 19 NA
22 74.93 temperature 25 1440 > th dose dependent rect. 13 11
85 75.11 temperature 25 1440 > th dose dependent rect. 17 23
100 75.15 temperature 25 1440 > th dose dependent no NA NA
111 75.18 temperature 25 1440 > th dose dependent rect. 19 23
123 75.22 temperature 25 1440 > th dose dependent rect. 22 23
152 75.31 temperature 25 1440 > th dose dependent rect. 13 1
300 76.16 temperature 25 1440 > th dose dependent rect. 17 1
354 76.66 radiation 1 1440 < th dose independent rect. 11 19
360 76.70 radiation 1 1440 > th dose independent rect. 11 19
365 76.85 humidity 90 720 < th dose dependent rect. 17 4
375 77.05 humidity 80 1440 < th dose independent rect. 7 13
380 77.13 humidity 80 1440 > th dose independent rect. 7 14
419 77.73 humidity 50 1440 > th dose dependent rect. 10 12
421 77.75 radiation 1 1440 < th dose dependent rect. 9 18
425 77.77 radiation 1 1440 < th dose dependent rect. 9 16
435 77.82 radiation 1 1440 < th dose dependent rect. 11 16
441 77.84 radiation 1 1440 < th dose dependent rect. 11 14
450 77.87 radiation 1 1440 < th dose dependent rect. 9 10
470 77.93 radiation 1 1440 < th dose dependent rect. 11 8
493 78.03 radiation 1 1440 < th dose dependent sin 22 NA
507 78.08 humidity 80 1440 < th dose independent rect. 7 8
530 78.26 humidity 50 720 > th dose dependent rect. 16 7
537 78.29 humidity 90 1440 < th dose dependent rect. 9 13
544 78.35 humidity 50 1440 > th dose dependent rect. 13 9
559 78.42 humidity 50 1440 > th dose dependent sin 20 NA
589 78.55 radiation 1 720 < th dose dependent rect. 5 21
626 78.82 humidity 90 1440 < th dose dependent rect. 13 8
629 78.84 temperature 30 1440 < th dose independent rect. 13 2
637 78.86 humidity 90 1440 < th dose dependent sin 20 NA
643 78.91 humidity 80 1440 < th dose independent sin 1 NA
660 78.99 humidity 80 1440 > th dose independent sin 0 NA
693 79.09 temperature 30 1440 < th dose independent rect. 13 6
694 79.09 temperature 30 1440 < th dose independent rect. 13 11
704 79.11 temperature 30 1440 < th dose independent rect. 13 14
705 79.11 temperature 30 1440 < th dose independent rect. 13 19
734 79.22 temperature 30 1440 > th dose independent rect. 13 6
759 79.28 temperature 30 1440 > th dose independent rect. 13 2
786 79.39 temperature 30 1440 < th dose independent rect. 11 8
787 79.39 temperature 30 1440 < th dose independent rect. 11 10
788 79.39 temperature 30 1440 < th dose independent rect. 11 13
793 79.40 temperature 30 1440 < th dose independent rect. 11 21
796 79.41 temperature 30 1440 < th dose independent rect. 11 16
802 79.42 temperature 30 1440 < th dose independent rect. 11 5
809 79.43 radiation 1 1440 > th dose independent rect. 11 8
840 79.52 radiation 1 1440 < th dose independent rect. 11 16
841 79.53 humidity 70 720 > th dose independent sin 12 NA
844 79.54 radiation 1 1440 < th dose independent rect. 11 14
853 79.59 radiation 1 1440 < th dose independent rect. 11 8
857 79.62 temperature 30 1440 > th dose independent rect. 11 8
902 79.66 temperature 30 1440 < th dose independent sin 16 NA
908 79.66 temperature 30 1440 < th dose independent rect. 18 22
961 79.74 temperature 30 1440 > th dose independent rect. 11 5
992 79.77 radiation 1 1440 < th dose independent sin 15 NA
996 79.78 temperature 30 1440 > th dose independent sin 16 NA