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Os06g0708000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
Description : MAP kinase homolog.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
73.1 | 0.402 | 11 | 0.572 | 0.326 | -1.41 | 0.442 | 2.83 | 0.251 | 17.7 | 25.2 | 1187 | -- | -- |
75.87 | 0.406 | 11.1 | -0.0569 | 0.327 | -1.1 | 0.232 | -- | 0.0594 | 17.2 | 25.36 | 1216 | -- | -- |
73.57 | 0.399 | 11 | 0.569 | 0.324 | -1.4 | -- | 2.81 | 0.25 | 17.6 | 25.23 | 1194 | -- | -- |
75.92 | 0.406 | 11.1 | -0.122 | 0.304 | -1.07 | -- | -- | 0.0684 | 16.9 | 25.3 | 1255 | -- | -- |
78.63 | 0.413 | 11 | 0.615 | -- | -1.43 | -- | 2.77 | 0.281 | -- | 25 | 1239 | -- | -- |
119.01 | 0.511 | 11.1 | -0.468 | 0.447 | -- | 0.405 | -- | -0.0341 | 15.8 | -- | -- | -- | -- |
119.49 | 0.512 | 11.1 | -0.462 | 0.449 | -- | -- | -- | -0.0318 | 15.7 | -- | -- | -- | -- |
80.83 | 0.419 | 11.1 | -0.0885 | -- | -1.12 | -- | -- | 0.0954 | -- | 25.2 | 1260 | -- | -- |
76.25 | 0.407 | 11.1 | -- | 0.308 | -1.1 | -- | -- | 0.0928 | 16.7 | 25.24 | 1289 | -- | -- |
130.66 | 0.534 | 11.1 | -0.481 | -- | -- | -- | -- | -0.0438 | -- | -- | -- | -- | -- |
125.11 | 0.523 | 11.1 | -- | 0.458 | -- | -- | -- | 0.0196 | 15.6 | -- | -- | -- | -- |
81.08 | 0.419 | 11.1 | -- | -- | -1.17 | -- | -- | 0.103 | -- | 25.05 | 1260 | -- | -- |
136.75 | 0.546 | 11.1 | -- | -- | -- | -- | -- | 0.00955 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance![]() |
Histogram![]() ![]() |
Local optima within top1000 grid-points
rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|
1 | 73.35 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 17 |
3 | 74.64 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 13 |
4 | 74.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 22 |
7 | 74.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 15 |
20 | 74.93 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
21 | 74.93 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
22 | 74.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 11 |
85 | 75.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
100 | 75.15 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
111 | 75.18 | temperature | 25 | 1440 | > th | dose dependent | rect. | 19 | 23 |
123 | 75.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |
152 | 75.31 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
300 | 76.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
354 | 76.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
360 | 76.70 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
365 | 76.85 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 4 |
375 | 77.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
380 | 77.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
419 | 77.73 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 12 |
421 | 77.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
425 | 77.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 16 |
435 | 77.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
441 | 77.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
450 | 77.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 10 |
470 | 77.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
493 | 78.03 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
507 | 78.08 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
530 | 78.26 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 7 |
537 | 78.29 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 13 |
544 | 78.35 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 9 |
559 | 78.42 | humidity | 50 | 1440 | > th | dose dependent | sin | 20 | NA |
589 | 78.55 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 21 |
626 | 78.82 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 8 |
629 | 78.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 2 |
637 | 78.86 | humidity | 90 | 1440 | < th | dose dependent | sin | 20 | NA |
643 | 78.91 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
660 | 78.99 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
693 | 79.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 6 |
694 | 79.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 11 |
704 | 79.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 14 |
705 | 79.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 19 |
734 | 79.22 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
759 | 79.28 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 2 |
786 | 79.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 8 |
787 | 79.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 10 |
788 | 79.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 13 |
793 | 79.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 21 |
796 | 79.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 16 |
802 | 79.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 5 |
809 | 79.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
840 | 79.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
841 | 79.53 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
844 | 79.54 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
853 | 79.59 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
857 | 79.62 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 8 |
902 | 79.66 | temperature | 30 | 1440 | < th | dose independent | sin | 16 | NA |
908 | 79.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
961 | 79.74 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 5 |
992 | 79.77 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
996 | 79.78 | temperature | 30 | 1440 | > th | dose independent | sin | 16 | NA |