FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0707800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NBS-LRR disease resistance protein homologue.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.73 (0.0296) R2 : 0.317
β1 : -0.817 (0.108) R2dD : 0.0924 R2D : 0.0666
β2 : -- (--) R2dC : -- R2C : --
β3 : 16 (1.38) R2dE : 2.79 R2E : -2.28
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -51.6 (4.8) R2dD*E : 2.38 R2D*E : -2.55
γ1 : 0.396 (0.0625) R2dN8 : 0.0806 R2N8 : 0.0518
σ : 0.545
deviance : 137.02
__
_____
C
peak time of C : --
E
wheather : precipitation
threshold : 0.1011
memory length : 266
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2
open length of G : 2.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
129.33 0.534 4.74 -0.822 0.391 16.1 -0.0116 -51.2 0.407 18.4 0.1058 270 2 2.01
171.5 0.615 4.68 -0.625 0.153 1.44 1.2 -- 0.331 16.1 0.003154 88 3.52 4.42
129.33 0.53 4.74 -0.818 0.391 16.1 -- -51.2 0.407 18.4 0.1099 268 2 2.01
168.05 0.604 4.67 -0.587 0.193 1.99 -- -- 0.359 16.2 0.02787 112 3.67 4.31
137.02 0.545 4.73 -0.817 -- 16 -- -51.6 0.396 -- 0.1011 266 2 2.03
173.55 0.618 4.68 -0.611 0.137 -- 1.13 -- 0.328 16 -- -- -- --
175.51 0.62 4.68 -0.599 0.233 -- -- -- 0.335 19.1 -- -- -- --
170.25 0.608 4.67 -0.629 -- 2.12 -- -- 0.344 -- 0.2084 106 3.77 4.45
176.45 0.619 4.66 -- 0.29 2.18 -- -- 0.42 18.7 0.4732 108 3.74 5.17
178.38 0.624 4.67 -0.603 -- -- -- -- 0.33 -- -- -- -- --
184.96 0.636 4.66 -- 0.24 -- -- -- 0.401 19 -- -- -- --
179.7 0.624 4.65 -- -- 1.78 -- -- 0.415 -- 0.418 84 3.93 5.74
187.98 0.64 4.66 -- -- -- -- -- 0.397 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 129.34 precipitation 0.1 270 > th dose independent rect. 2 2
2 129.40 precipitation 0.1 270 > th dose dependent rect. 2 2
3 129.79 radiation 1.0 1440 < th dose independent rect. 11 1
4 129.79 radiation 1.0 1440 < th dose dependent rect. 11 1
5 131.19 radiation 1.0 1440 < th dose independent rect. 13 2
6 131.19 radiation 1.0 1440 < th dose dependent rect. 13 2
7 131.30 radiation 1.0 1440 > th dose independent rect. 12 3
8 131.34 radiation 1.0 1440 < th dose independent rect. 9 6
9 131.34 radiation 1.0 1440 < th dose dependent rect. 9 6
18 131.54 radiation 1.0 1440 > th dose independent rect. 9 6
26 133.08 humidity 90.0 720 > th dose dependent rect. 20 1
64 134.80 precipitation 0.1 270 > th dose independent rect. 24 4
67 134.99 precipitation 0.1 270 > th dose dependent rect. 24 4
81 136.54 humidity 90.0 720 > th dose dependent rect. 20 3
93 138.28 wind 7.0 4320 > th dose independent rect. 17 1
94 138.35 wind 7.0 4320 < th dose independent rect. 17 1
110 139.34 radiation 10.0 1440 < th dose dependent rect. 11 17
115 139.38 radiation 10.0 1440 < th dose dependent rect. 11 12
169 141.68 humidity 60.0 14400 > th dose independent rect. 20 12
172 141.82 humidity 60.0 14400 > th dose independent rect. 3 5
175 141.91 atmosphere 1005.0 10 < th dose dependent rect. 1 6
207 142.51 radiation 10.0 1440 < th dose dependent sin 18 NA
213 142.58 atmosphere 1005.0 270 < th dose dependent rect. 1 1
215 142.62 atmosphere 1005.0 720 < th dose independent rect. 19 6
232 142.93 humidity 60.0 14400 < th dose independent rect. 6 1
234 142.93 humidity 60.0 14400 < th dose independent rect. 20 1
236 142.93 radiation 20.0 14400 > th dose independent rect. 17 1
256 142.93 atmosphere 1005.0 720 > th dose independent rect. 20 5
288 142.93 humidity 60.0 14400 < th dose dependent rect. 6 1
290 142.93 humidity 60.0 14400 < th dose dependent rect. 20 1
292 142.93 radiation 20.0 14400 > th dose dependent rect. 17 1
347 142.97 atmosphere 1005.0 720 < th dose independent rect. 20 3
361 143.29 atmosphere 1005.0 720 < th dose independent rect. 20 1
362 143.31 radiation 1.0 1440 > th dose independent rect. 9 1
364 143.39 humidity 60.0 14400 > th dose independent rect. 24 8
382 143.54 humidity 60.0 14400 > th dose independent rect. 7 1
387 143.62 humidity 80.0 14400 < th dose independent rect. 22 1
420 144.45 atmosphere 1005.0 270 < th dose dependent rect. 24 3
423 144.47 wind 5.0 4320 > th dose dependent rect. 18 1
447 144.96 radiation 1.0 1440 > th dose independent rect. 11 19
455 145.00 radiation 1.0 1440 < th dose independent rect. 11 19
492 145.73 wind 7.0 14400 > th dose dependent rect. 15 1
500 145.91 humidity 80.0 1440 > th dose independent rect. 1 16
533 146.23 humidity 80.0 1440 < th dose independent rect. 1 14
572 146.44 humidity 80.0 720 > th dose independent rect. 18 1
581 146.52 humidity 80.0 1440 < th dose independent sin 2 NA
616 146.67 humidity 80.0 1440 > th dose independent sin 1 NA
635 146.70 radiation 1.0 1440 < th dose independent rect. 11 12
761 147.38 humidity 90.0 720 > th dose independent rect. 20 1
790 147.59 temperature 20.0 90 > th dose independent rect. 1 5
797 147.63 humidity 90.0 720 < th dose independent rect. 20 3
914 148.10 humidity 80.0 1440 > th dose independent rect. 12 2
962 148.44 precipitation 0.1 270 < th dose independent sin 10 NA
963 148.44 precipitation 0.1 270 < th dose dependent sin 10 NA