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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0707700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0195) R2 : 0.0167
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.114 (0.0411) R2dN8 : 0.0216 R2N8 : 0.0167
σ : 0.367
deviance : 61.95
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.56 0.36 2.91 -0.0113 0.0271 0.083 -0.364 -1.68 0.0735 7.32 22.36 706 -- --
61.2 0.367 2.89 0.0848 0.00734 -0.0126 -0.46 -- 0.127 16.8 2.35 435 -- --
58.81 0.357 2.91 -0.00434 0.0307 0.0825 -- -1.43 0.0798 7.42 22.38 698 -- --
61.61 0.368 2.89 0.0834 0.0961 -0.0756 -- -- 0.128 11.5 2.35 435 -- --
58.83 0.357 2.91 0.0016 -- 0.0583 -- -1.4 0.0861 -- 22.77 704 -- --
61.21 0.367 2.89 0.0848 0.00321 -- -0.462 -- 0.126 16.8 -- -- -- --
61.76 0.368 2.89 0.0832 0.00802 -- -- -- 0.124 10.7 -- -- -- --
61.65 0.366 2.88 0.12 -- -0.046 -- -- 0.151 -- 22.17 1066 -- --
60.97 0.364 2.89 -- 0.038 -0.244 -- -- 0.146 0.674 1.16 2808 -- --
61.77 0.367 2.89 0.0831 -- -- -- -- 0.124 -- -- -- -- --
61.95 0.368 2.9 -- 0.00758 -- -- -- 0.114 9.9 -- -- -- --
60.95 0.364 2.89 -- -- -0.252 -- -- 0.157 -- 1.162 2884 -- --
61.95 0.367 2.9 -- -- -- -- -- 0.114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.99 temperature 10.0 1440 > th dose independent rect. 21 1
4 55.99 temperature 30.0 1440 < th dose independent rect. 21 1
8 55.99 humidity 50.0 1440 > th dose independent rect. 21 1
14 55.99 atmosphere 995.0 1440 > th dose independent rect. 21 1
15 55.99 radiation 1.0 1440 < th dose independent rect. 21 1
35 55.99 temperature 10.0 1440 > th dose independent rect. 22 23
38 55.99 temperature 25.0 30 > th dose dependent rect. 20 1
39 56.00 atmosphere 1005.0 30 > th dose dependent rect. 20 1
40 56.00 radiation 30.0 1440 < th dose dependent rect. 21 1
42 56.01 temperature 25.0 30 > th dose independent rect. 20 1
43 56.01 humidity 90.0 30 < th dose independent rect. 20 1
48 56.03 radiation 40.0 14400 < th dose dependent rect. 21 1
61 56.10 humidity 90.0 30 < th dose dependent rect. 20 1
63 56.11 wind 3.0 30 > th dose independent rect. 20 1
65 56.11 atmosphere 1005.0 30 > th dose independent rect. 20 1
66 56.12 wind 5.0 30 < th dose independent rect. 20 1
67 56.12 humidity 80.0 30 > th dose independent rect. 20 1
72 56.13 temperature 10.0 30 > th dose independent rect. 20 1
74 56.13 temperature 30.0 30 < th dose independent rect. 20 1
75 56.13 humidity 50.0 30 > th dose independent rect. 20 1
78 56.13 atmosphere 995.0 30 > th dose independent rect. 20 1
80 56.13 atmosphere 1010.0 30 < th dose independent rect. 20 1
82 56.13 radiation 1.0 30 < th dose independent rect. 20 1
87 56.13 precipitation 0.1 30 < th dose independent rect. 20 1
88 56.13 temperature 10.0 30 > th dose independent rect. 21 23
89 56.13 wind 7.0 30 < th dose dependent rect. 20 1
91 56.13 radiation 1.0 30 < th dose dependent rect. 20 1
96 56.13 precipitation 0.1 30 < th dose dependent rect. 20 1
98 56.16 wind 1.0 30 > th dose dependent rect. 20 1
100 56.16 humidity 50.0 30 > th dose dependent rect. 20 1
105 56.23 atmosphere 1015.0 30 < th dose dependent rect. 20 1
110 56.34 atmosphere 995.0 30 > th dose independent rect. 21 23
113 56.42 temperature 30.0 30 < th dose dependent rect. 20 1
153 56.62 precipitation 0.1 30 < th dose independent rect. 21 23
154 56.62 precipitation 0.1 30 < th dose dependent rect. 21 23
161 56.77 temperature 25.0 30 > th dose dependent rect. 20 9
165 56.79 temperature 25.0 30 > th dose dependent rect. 20 5
172 56.87 humidity 50.0 10 > th dose independent rect. 21 23
189 57.19 wind 9.0 30 < th dose independent rect. 21 23
191 57.25 humidity 50.0 10 > th dose dependent rect. 21 23
197 57.32 radiation 10.0 10 < th dose independent rect. 21 23
204 57.58 radiation 10.0 90 < th dose independent rect. 7 5
211 57.74 radiation 40.0 720 < th dose independent rect. 1 8
212 57.75 radiation 20.0 720 > th dose independent rect. 15 20
216 57.79 radiation 20.0 720 > th dose dependent rect. 15 19
224 57.86 radiation 20.0 720 > th dose dependent sin 11 NA
231 57.91 radiation 30.0 720 < th dose independent sin 11 NA
235 57.94 humidity 90.0 10 < th dose dependent rect. 17 19
236 57.94 radiation 30.0 10 < th dose dependent rect. 21 23
240 57.97 radiation 20.0 90 < th dose dependent rect. 7 6
252 58.01 radiation 30.0 720 < th dose independent rect. 19 15
257 58.02 radiation 20.0 720 < th dose independent rect. 21 13
260 58.05 radiation 20.0 720 > th dose independent sin 11 NA
273 58.10 radiation 20.0 10 < th dose dependent rect. 6 7
280 58.12 radiation 20.0 720 > th dose dependent rect. 6 4
308 58.16 radiation 10.0 10 < th dose independent rect. 10 2
309 58.16 radiation 20.0 720 > th dose independent rect. 6 6
314 58.16 radiation 10.0 720 < th dose independent rect. 21 10
347 58.17 radiation 30.0 1440 < th dose independent rect. 15 17
349 58.17 radiation 10.0 720 > th dose dependent rect. 9 1
370 58.18 radiation 10.0 10 < th dose dependent rect. 10 2
390 58.19 radiation 40.0 720 > th dose independent rect. 14 20
393 58.20 radiation 30.0 720 < th dose independent rect. 3 7
402 58.21 radiation 20.0 720 > th dose independent rect. 9 1
408 58.21 radiation 20.0 720 < th dose independent rect. 14 20
410 58.21 radiation 40.0 720 < th dose dependent rect. 21 14
441 58.23 temperature 10.0 30 > th dose dependent rect. 21 23
478 58.26 radiation 10.0 10 < th dose dependent rect. 12 1
501 58.28 humidity 90.0 10 < th dose dependent rect. 20 16
510 58.30 radiation 20.0 720 < th dose independent sin 7 NA
525 58.31 radiation 10.0 90 < th dose independent rect. 6 9
528 58.31 radiation 20.0 720 < th dose independent rect. 21 19
534 58.32 radiation 10.0 90 < th dose independent rect. 6 11
584 58.37 radiation 20.0 720 < th dose independent rect. 5 19
588 58.37 humidity 90.0 30 < th dose dependent sin 8 NA
616 58.38 humidity 60.0 90 < th dose dependent rect. 8 3
650 58.39 radiation 20.0 720 < th dose independent rect. 5 11
654 58.39 radiation 40.0 4320 > th dose dependent rect. 8 1
675 58.40 atmosphere 1010.0 4320 > th dose independent rect. 10 1
679 58.40 atmosphere 1015.0 30 < th dose independent rect. 21 23
683 58.40 radiation 40.0 720 < th dose dependent rect. 21 19
716 58.43 humidity 50.0 30 > th dose dependent sin 7 NA
723 58.43 radiation 40.0 720 < th dose dependent rect. 14 20
728 58.44 atmosphere 1010.0 4320 < th dose independent rect. 11 1
748 58.45 radiation 40.0 720 < th dose dependent rect. 15 18
754 58.46 humidity 60.0 90 < th dose independent rect. 8 3
772 58.46 radiation 40.0 720 < th dose dependent rect. 5 6
773 58.46 radiation 40.0 720 < th dose dependent rect. 4 8
776 58.46 radiation 40.0 720 < th dose dependent rect. 5 19
779 58.47 temperature 15.0 14400 < th dose independent rect. 19 3
807 58.48 radiation 40.0 720 < th dose dependent sin 7 NA
811 58.48 humidity 60.0 90 > th dose dependent rect. 21 13
817 58.49 radiation 40.0 4320 < th dose independent rect. 8 1
818 58.49 wind 1.0 10 < th dose independent rect. 8 2
823 58.49 temperature 15.0 14400 > th dose independent rect. 11 10
826 58.49 humidity 60.0 90 < th dose independent rect. 16 19
873 58.51 humidity 90.0 10 < th dose dependent rect. 24 12
874 58.51 radiation 40.0 720 < th dose dependent rect. 4 13
876 58.51 humidity 70.0 90 < th dose dependent rect. 16 19
879 58.51 humidity 60.0 10 > th dose dependent rect. 15 21
888 58.52 temperature 15.0 14400 < th dose independent rect. 13 11
897 58.52 radiation 40.0 720 < th dose dependent rect. 5 11
906 58.53 temperature 15.0 14400 > th dose independent rect. 12 2
953 58.54 wind 7.0 10 > th dose dependent rect. 12 1
955 58.54 wind 1.0 10 < th dose dependent rect. 8 1
962 58.54 atmosphere 1015.0 14400 > th dose dependent rect. 13 8
999 58.56 atmosphere 1015.0 14400 > th dose independent rect. 14 3
1000 58.56 atmosphere 1015.0 14400 < th dose independent rect. 15 5