Os06g0707400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os06g0707400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.85 | 0.387 | 9.25 | -1.79 | 1.14 | 2.09 | -0.134 | -2.99 | -0.25 | 0.52 | 19.85 | 1794 | -- | -- |
| 67.82 | 0.384 | 9.17 | -1.45 | 1.13 | 2.5 | -0.35 | -- | -0.137 | 0.15 | 11.72 | 6240 | -- | -- |
| 67.88 | 0.384 | 9.25 | -1.81 | 1.14 | 2.09 | -- | -3.1 | -0.256 | 0.557 | 20.1 | 1804 | -- | -- |
| 68.06 | 0.384 | 9.18 | -1.47 | 1.13 | 2.54 | -- | -- | -0.162 | 0.134 | 9.577 | 6270 | -- | -- |
| 106.59 | 0.481 | 9.22 | -1.65 | -- | 2.93 | -- | -2.62 | -0.24 | -- | 16.24 | 979 | -- | -- |
| 177.37 | 0.624 | 9.05 | -0.233 | 1.19 | -- | -0.174 | -- | 0.428 | 0.0203 | -- | -- | -- | -- |
| 177.5 | 0.624 | 9.05 | -0.226 | 1.2 | -- | -- | -- | 0.428 | 0.0347 | -- | -- | -- | -- |
| 111.13 | 0.491 | 9.14 | -1.07 | -- | 3.08 | -- | -- | -0.0678 | -- | 4.248 | 983 | -- | -- |
| 97.9 | 0.461 | 9.09 | -- | 1.03 | 1.51 | -- | -- | 0.208 | 23.7 | 21.18 | 2701 | -- | -- |
| 267.41 | 0.764 | 9.02 | -0.189 | -- | -- | -- | -- | 0.445 | -- | -- | -- | -- | -- |
| 178.85 | 0.626 | 9.04 | -- | 1.19 | -- | -- | -- | 0.454 | 0.024 | -- | -- | -- | -- |
| 137.42 | 0.546 | 9.1 | -- | -- | 2.57 | -- | -- | 0.11 | -- | 15.54 | 967 | -- | -- |
| 268.35 | 0.765 | 9.02 | -- | -- | -- | -- | -- | 0.466 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 3 | 66.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 8 | 67.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 5 |
| 34 | 68.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 20 |
| 63 | 68.84 | temperature | 15 | 1440 | > th | dose dependent | sin | 5 | NA |
| 109 | 69.27 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 111 | 69.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 114 | 69.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 115 | 69.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 142 | 69.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 562 | 70.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 588 | 70.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 628 | 70.81 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 692 | 71.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 9 |
| 829 | 71.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 878 | 71.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 976 | 71.35 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 13 |