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Os06g0705700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0322) R2 : 0.877
β1 : -3.07 (0.118) R2dD : 0.191 R2D : 0.204
β2 : 3.64 (0.0811) R2dC : 0.554 R2C : 0.55
β3 : 1.42 (0.0813) R2dE : 0.0822 R2E : 0.0696
β4 : 4.21 (0.341) R2dD*C : 0.0417 R2D*C : 0.0498
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.144 (0.0687) R2dN8 : 0.00195 R2N8 : 0.00277
σ : 0.61
deviance : 168.69
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_____
C
peak time of C : 20.4
E
wheather : radiation
threshold : 6.919
memory length : 9
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 0.256
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
159.28 0.593 11.4 -3.05 3.61 1.75 4.01 1.88 0.184 19.9 7.01 10 1.04 --
168.69 0.61 11.5 -3.07 3.64 1.42 4.21 -- 0.144 20.4 6.919 9 0.256 --
194.25 0.649 11.4 -3.12 2.96 1.71 -- 2.89 0.189 19.7 6.631 6 3.99 --
221.46 0.693 11.4 -3.12 3.71 1.52 -- -- 0.198 20.2 6.137 9 2.23e-05 --
225.09 0.703 11.4 -3.15 -- 3.59 -- 3.81 0.166 -- 67.61 47 9.16 --
204.67 0.671 11.5 -3.04 3.73 -- 3.91 -- 0.114 21.5 -- -- -- --
261.14 0.757 11.5 -3.19 3.71 -- -- -- 0.109 21.5 -- -- -- --
261.19 0.753 11.4 -3.18 -- 3.68 -- -- 0.113 -- 497.2 2 8.54 --
486.99 1.03 11.4 -- 3.65 1.63 -- -- 0.523 20.1 5.498 4 0.208 --
1072.58 1.53 11.4 -3.16 -- -- -- -- 0.0983 -- -- -- -- --
528.76 1.08 11.4 -- 3.71 -- -- -- 0.463 21.4 -- -- -- --
528.34 1.07 11.3 -- -- 3.68 -- -- 0.469 -- 521.7 2 8.61 --
1336.12 1.71 11.3 -- -- -- -- -- 0.449 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 162.94 radiation 10.0 10 < th dose dependent sin 8 NA
3 164.09 radiation 10.0 10 < th dose dependent rect. 23 16
15 167.29 wind 1.0 270 < th dose independent rect. 4 1
21 168.24 radiation 10.0 10 < th dose dependent rect. 23 11
31 170.05 radiation 1.0 30 > th dose independent sin 7 NA
36 170.46 radiation 1.0 30 < th dose independent rect. 23 18
38 170.60 wind 1.0 270 < th dose dependent rect. 4 1
39 170.64 wind 1.0 90 > th dose independent rect. 1 16
40 170.65 radiation 1.0 30 < th dose independent sin 6 NA
49 171.05 wind 1.0 90 > th dose independent rect. 23 7
57 171.53 radiation 1.0 30 < th dose independent rect. 23 15
61 171.58 radiation 1.0 30 < th dose independent rect. 23 13
63 171.69 radiation 1.0 30 < th dose independent rect. 23 9
89 172.64 radiation 1.0 270 > th dose dependent rect. 5 1
90 172.68 radiation 1.0 30 > th dose independent rect. 5 6
150 173.64 wind 1.0 90 > th dose independent rect. 23 20
158 174.00 wind 7.0 90 < th dose dependent rect. 4 7
212 174.68 wind 1.0 90 < th dose independent rect. 4 9
224 175.03 temperature 10.0 270 > th dose dependent rect. 23 2
225 175.05 temperature 10.0 90 > th dose dependent rect. 23 5
235 175.38 temperature 20.0 270 > th dose independent rect. 8 9
238 175.48 wind 1.0 90 < th dose independent rect. 4 7
257 175.88 wind 3.0 270 < th dose dependent rect. 4 3
264 176.06 radiation 40.0 90 < th dose independent rect. 11 17
269 176.16 wind 1.0 90 < th dose independent rect. 4 17
306 176.69 wind 9.0 270 < th dose independent rect. 3 19
309 176.71 precipitation 0.1 270 < th dose independent rect. 3 19
310 176.71 precipitation 0.1 270 < th dose dependent rect. 3 19
321 176.83 humidity 60.0 90 > th dose independent rect. 4 7
322 176.84 humidity 80.0 90 > th dose independent rect. 23 5
327 176.88 radiation 1.0 270 > th dose independent rect. 5 1
352 177.03 humidity 80.0 270 > th dose independent rect. 23 2
355 177.06 temperature 15.0 270 > th dose independent rect. 22 5
359 177.07 temperature 30.0 270 < th dose independent rect. 22 5
360 177.07 humidity 50.0 270 > th dose independent rect. 22 5
363 177.07 atmosphere 995.0 270 > th dose independent rect. 22 5
364 177.07 radiation 1.0 270 < th dose independent rect. 22 5
369 177.07 temperature 10.0 270 > th dose independent rect. 3 19
370 177.07 radiation 1.0 270 < th dose dependent rect. 22 5
380 177.09 wind 9.0 270 < th dose independent rect. 22 5
394 177.11 wind 9.0 270 < th dose independent rect. 1 22
399 177.15 precipitation 0.1 90 < th dose independent rect. 4 7
401 177.15 precipitation 0.1 90 < th dose dependent rect. 4 7
406 177.22 wind 7.0 10 < th dose dependent rect. 5 6
411 177.25 wind 1.0 90 < th dose dependent rect. 4 17
416 177.30 precipitation 0.1 270 < th dose independent rect. 22 5
417 177.30 precipitation 0.1 270 < th dose dependent rect. 22 5
419 177.33 temperature 15.0 90 > th dose independent rect. 4 7
420 177.33 wind 1.0 90 < th dose dependent rect. 4 10
422 177.35 temperature 15.0 270 > th dose independent rect. 1 22
464 177.60 wind 7.0 270 < th dose independent rect. 23 2
465 177.61 wind 1.0 90 > th dose independent rect. 11 18
469 177.62 temperature 15.0 270 > th dose independent rect. 23 2
476 177.66 temperature 30.0 270 < th dose independent rect. 23 2
477 177.66 humidity 50.0 270 > th dose independent rect. 23 2
480 177.66 atmosphere 995.0 270 > th dose independent rect. 23 2
481 177.66 radiation 1.0 270 < th dose independent rect. 23 2
487 177.66 radiation 1.0 270 < th dose dependent rect. 23 2
506 177.78 atmosphere 995.0 90 > th dose independent rect. 4 7
507 177.78 atmosphere 1015.0 90 < th dose independent rect. 4 7
508 177.78 temperature 10.0 90 > th dose independent rect. 11 17
517 177.84 precipitation 0.1 270 < th dose independent rect. 23 2
518 177.84 precipitation 0.1 270 < th dose dependent rect. 23 2
523 177.88 wind 9.0 270 < th dose independent rect. 4 17
524 177.89 wind 7.0 270 < th dose independent rect. 17 15
532 177.93 wind 9.0 90 < th dose independent rect. 4 7
553 178.12 atmosphere 1015.0 90 < th dose independent rect. 23 5
563 178.18 precipitation 0.1 270 < th dose independent rect. 17 15
564 178.18 precipitation 0.1 270 < th dose dependent rect. 17 15
565 178.19 humidity 50.0 90 > th dose dependent rect. 23 5
570 178.26 wind 9.0 90 < th dose independent rect. 11 17
573 178.27 temperature 10.0 270 > th dose independent rect. 21 7
574 178.27 temperature 30.0 270 < th dose independent rect. 21 7
575 178.27 humidity 50.0 270 > th dose independent rect. 21 7
578 178.27 atmosphere 995.0 270 > th dose independent rect. 21 7
579 178.27 radiation 1.0 270 < th dose independent rect. 21 7
584 178.27 temperature 10.0 270 > th dose independent rect. 4 17
585 178.27 temperature 10.0 10 > th dose dependent rect. 23 6
586 178.27 radiation 1.0 270 < th dose dependent rect. 21 7
591 178.28 atmosphere 1015.0 270 < th dose independent rect. 23 2
592 178.28 radiation 1.0 10 > th dose dependent sin 10 NA
595 178.32 wind 9.0 270 < th dose independent rect. 21 7
617 178.48 wind 1.0 270 > th dose independent rect. 8 9
661 178.65 atmosphere 1015.0 90 < th dose independent rect. 4 19
671 178.73 wind 9.0 90 < th dose dependent rect. 23 5
673 178.74 atmosphere 1015.0 270 < th dose independent rect. 8 9
674 178.74 temperature 10.0 270 > th dose independent rect. 17 15
675 178.75 temperature 30.0 90 < th dose independent rect. 4 7
695 178.87 wind 9.0 270 < th dose dependent rect. 23 2
697 178.89 precipitation 0.1 270 < th dose independent rect. 1 22
698 178.89 precipitation 0.1 270 < th dose dependent rect. 1 22
699 178.90 radiation 40.0 270 < th dose independent rect. 17 15
704 178.95 precipitation 0.1 90 < th dose independent rect. 11 17
705 178.95 precipitation 0.1 90 < th dose dependent rect. 11 17
709 178.99 humidity 50.0 270 > th dose dependent rect. 23 2
711 179.00 atmosphere 1015.0 270 < th dose independent rect. 4 17
728 179.14 precipitation 0.1 10 < th dose independent rect. 5 6
730 179.14 precipitation 0.1 10 < th dose dependent rect. 5 6
731 179.15 precipitation 0.1 270 < th dose independent rect. 8 9
733 179.15 precipitation 0.1 270 < th dose dependent rect. 8 9
743 179.20 temperature 10.0 10 > th dose dependent rect. 5 6
770 179.42 radiation 40.0 10 < th dose dependent rect. 11 18
771 179.44 wind 5.0 10 < th dose independent rect. 5 6
780 179.48 humidity 50.0 270 > th dose independent rect. 17 15
783 179.50 temperature 15.0 10 > th dose independent rect. 11 18
786 179.53 wind 9.0 270 < th dose independent rect. 8 9
788 179.54 temperature 10.0 10 > th dose independent rect. 5 6
790 179.54 humidity 50.0 10 > th dose independent rect. 5 6
791 179.54 atmosphere 995.0 10 > th dose independent rect. 5 6
792 179.54 atmosphere 1015.0 10 < th dose independent rect. 5 6
797 179.57 wind 9.0 10 < th dose independent rect. 5 6
851 179.81 wind 9.0 10 < th dose independent rect. 11 18
854 179.85 temperature 10.0 90 > th dose dependent rect. 4 7
859 179.91 radiation 40.0 90 < th dose dependent rect. 11 17
860 179.92 radiation 40.0 90 < th dose independent rect. 4 7
871 179.95 temperature 30.0 10 < th dose independent rect. 5 6
883 180.04 radiation 1.0 270 > th dose independent rect. 8 9
902 180.16 atmosphere 995.0 90 > th dose independent rect. 4 19
903 180.17 atmosphere 995.0 270 > th dose independent rect. 17 15
909 180.21 wind 1.0 90 > th dose independent sin 3 NA
933 180.36 atmosphere 995.0 90 > th dose independent rect. 11 17
942 180.38 atmosphere 995.0 270 > th dose dependent rect. 22 5
955 180.47 atmosphere 995.0 270 > th dose dependent rect. 23 3
972 180.57 wind 1.0 43200 < th dose dependent rect. 4 2
980 180.60 temperature 15.0 10 > th dose independent rect. 23 6