Os06g0705600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os06g0705600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.08 | 0.596 | 2.94 | 0.0708 | 0.0556 | 1.15 | 0.129 | 4.77 | -0.00141 | 21.1 | 20.07 | 7 | 3 | 1 |
| 157.98 | 0.59 | 2.94 | -0.0568 | 0.0564 | 1.84 | 0.113 | -- | 0.00961 | 22.1 | 23.1 | 3 | 3.05 | 1.05 |
| 161.14 | 0.591 | 2.94 | 0.0699 | 0.0558 | 1.15 | -- | 4.77 | -0.00143 | 21.1 | 20.05 | 6 | 3 | 1 |
| 158.03 | 0.589 | 2.94 | -0.0612 | 0.056 | 1.85 | -- | -- | 0.00945 | 22 | 23.1 | 3 | 3.05 | 1.05 |
| 161.32 | 0.592 | 2.94 | 0.0699 | -- | 1.15 | -- | 4.77 | -0.00143 | -- | 20.05 | 6 | 3 | 1 |
| 189.07 | 0.645 | 2.95 | 0.00643 | 0.173 | -- | 0.374 | -- | -0.0372 | 2.95 | -- | -- | -- | -- |
| 189.54 | 0.645 | 2.95 | -0.00197 | 0.174 | -- | -- | -- | -0.0394 | 2.85 | -- | -- | -- | -- |
| 158.21 | 0.586 | 2.94 | -0.0373 | -- | 1.84 | -- | -- | 0.0361 | -- | 23.14 | 7 | 3.03 | 0.983 |
| 158.13 | 0.589 | 2.94 | -- | 0.0558 | 1.84 | -- | -- | 0.0161 | 21.9 | 23.11 | 3 | 3.05 | 1.06 |
| 191.3 | 0.646 | 2.95 | 0.00545 | -- | -- | -- | -- | -0.0349 | -- | -- | -- | -- | -- |
| 189.54 | 0.644 | 2.95 | -- | 0.174 | -- | -- | -- | -0.0392 | 2.85 | -- | -- | -- | -- |
| 157.87 | 0.585 | 2.94 | -- | -- | 1.87 | -- | -- | 0.0184 | -- | 23.13 | 9 | 3.03 | 0.989 |
| 191.3 | 0.646 | 2.95 | -- | -- | -- | -- | -- | -0.0355 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 161.21 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 2 | 161.26 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 10 | 166.90 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 14 | 168.92 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 23 | 170.59 | humidity | 90.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 35 | 172.22 | wind | 1.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 46 | 172.68 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 49 | 172.99 | wind | 3.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 58 | 173.45 | temperature | 25.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 59 | 173.53 | wind | 5.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 66 | 173.84 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 69 | 173.84 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 73 | 173.84 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 75 | 173.84 | radiation | 1.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 80 | 173.84 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 23 |
| 82 | 173.84 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 90 | 174.11 | wind | 9.0 | 10 | < th | dose independent | rect. | 4 | 23 |
| 91 | 174.15 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 23 |
| 92 | 174.15 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 23 |
| 96 | 174.35 | radiation | 1.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 97 | 174.35 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 151 | 176.07 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 23 |
| 186 | 176.43 | humidity | 50.0 | 720 | < th | dose independent | rect. | 16 | 1 |
| 189 | 176.46 | humidity | 50.0 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 250 | 177.78 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 1 |
| 251 | 177.78 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 1 |
| 277 | 177.89 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 4 | 23 |
| 321 | 178.27 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 356 | 178.74 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 1 | 4 |
| 360 | 178.79 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 5 |
| 372 | 178.80 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 5 |
| 394 | 178.84 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 1 | 4 |
| 424 | 178.85 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 446 | 178.86 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 3 | 2 |
| 447 | 178.86 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 521 | 178.93 | wind | 3.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 621 | 179.05 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 4 | NA |
| 668 | 179.13 | radiation | 20.0 | 720 | > th | dose independent | rect. | 16 | 1 |
| 724 | 179.19 | precipitation | 0.1 | 10 | > th | dose independent | sin | 4 | NA |
| 726 | 179.20 | precipitation | 0.1 | 10 | < th | dose independent | sin | 4 | NA |
| 729 | 179.20 | precipitation | 0.1 | 10 | < th | dose dependent | sin | 4 | NA |
| 777 | 179.29 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 916 | 179.49 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 4 | 1 |