Os06g0704800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcriptional coactivation domain containing protein.
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Os06g0704800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcriptional coactivation domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.58 | 0.551 | 5.58 | 2.53 | 0.297 | -0.0529 | 0.29 | 2.57 | 1.14 | 20.9 | 39.87 | 11855 | -- | -- |
| 145.92 | 0.563 | 5.62 | 2.87 | 0.275 | -0.479 | 0.428 | -- | 1.25 | 21.5 | 64.28 | 8027 | -- | -- |
| 137.86 | 0.547 | 5.58 | 2.52 | 0.298 | -0.0525 | -- | 2.57 | 1.14 | 20.7 | 39.86 | 11855 | -- | -- |
| 144.17 | 0.559 | 5.58 | 3.18 | 0.159 | -0.679 | -- | -- | 1.29 | 21.6 | 59.37 | 12826 | -- | -- |
| 142.89 | 0.557 | 5.57 | 2.53 | -- | -0.0689 | -- | 2.53 | 1.14 | -- | 39.86 | 11862 | -- | -- |
| 152.93 | 0.58 | 5.62 | 2.71 | 0.297 | -- | 0.292 | -- | 1.15 | 20.7 | -- | -- | -- | -- |
| 153.19 | 0.58 | 5.62 | 2.7 | 0.298 | -- | -- | -- | 1.15 | 20.5 | -- | -- | -- | -- |
| 147.28 | 0.565 | 5.57 | 3.28 | -- | -0.84 | -- | -- | 1.34 | -- | 59.37 | 13849 | -- | -- |
| 232.53 | 0.71 | 5.78 | -- | 0.186 | 1.54 | -- | -- | 0.79 | 21.4 | 59.97 | 35887 | -- | -- |
| 158.16 | 0.588 | 5.61 | 2.7 | -- | -- | -- | -- | 1.15 | -- | -- | -- | -- | -- |
| 344.98 | 0.869 | 5.69 | -- | 0.292 | -- | -- | -- | 0.854 | 21.2 | -- | -- | -- | -- |
| 218.7 | 0.689 | 5.78 | -- | -- | 1.82 | -- | -- | 0.408 | -- | 59.96 | 47520 | -- | -- |
| 349.91 | 0.873 | 5.68 | -- | -- | -- | -- | -- | 0.852 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.20 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 2 | 137.28 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 3 | 137.28 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 4 |
| 5 | 137.44 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 11 | 137.63 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 14 | 137.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 4 |
| 18 | 137.74 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 38 | 137.76 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 41 | 137.77 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 45 | 137.77 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 49 | 137.78 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 124 | 137.89 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 148 | 137.92 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 149 | 137.92 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 155 | 137.96 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 181 | 138.06 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 194 | 138.08 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 195 | 138.08 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 19 |
| 197 | 138.09 | humidity | 60.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 248 | 138.14 | radiation | 40.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 252 | 138.15 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 21 |
| 254 | 138.17 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 258 | 138.17 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 259 | 138.17 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 1 | 3 |
| 261 | 138.20 | radiation | 40.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 268 | 138.22 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 367 | 138.34 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 4 | 16 |
| 381 | 138.36 | humidity | 60.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 397 | 138.36 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 11 | 9 |
| 424 | 138.38 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 466 | 138.39 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 501 | 138.42 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 520 | 138.45 | radiation | 30.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 539 | 138.48 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 593 | 138.52 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 17 | NA |
| 622 | 138.56 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 15 | 22 |
| 648 | 138.59 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 655 | 138.60 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 689 | 138.62 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 698 | 138.63 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 12 |
| 732 | 138.64 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 23 |
| 827 | 138.68 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 852 | 138.69 | humidity | 70.0 | 14400 | < th | dose dependent | no | NA | NA |
| 936 | 138.73 | humidity | 60.0 | 14400 | < th | dose independent | no | NA | NA |