Os06g0704500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os06g0704500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 348.31 | 0.877 | 3.75 | 0.0956 | 0.344 | 1.69 | -0.284 | 0.689 | -0.181 | 20.7 | 26.4 | 101 | -- | -- |
| 349.01 | 0.87 | 3.74 | 0.216 | 0.361 | 1.66 | -0.232 | -- | -0.155 | 20.6 | 26.64 | 101 | -- | -- |
| 348.57 | 0.87 | 3.74 | 0.112 | 0.345 | 1.69 | -- | 0.633 | -0.175 | 20.6 | 26.4 | 101 | -- | -- |
| 349.13 | 0.87 | 3.74 | 0.216 | 0.352 | 1.65 | -- | -- | -0.16 | 20.6 | 26.6 | 103 | -- | -- |
| 354.35 | 0.877 | 3.73 | 0.101 | -- | 1.72 | -- | 0.699 | -0.182 | -- | 26.2 | 58 | -- | -- |
| 387.77 | 0.923 | 3.82 | -0.195 | 0.535 | -- | -0.00315 | -- | -0.516 | 0.024 | -- | -- | -- | -- |
| 387.77 | 0.922 | 3.82 | -0.195 | 0.535 | -- | -- | -- | -0.516 | 0.0246 | -- | -- | -- | -- |
| 355.08 | 0.878 | 3.72 | 0.212 | -- | 1.66 | -- | -- | -0.151 | -- | 26.6 | 58 | -- | -- |
| 350.29 | 0.872 | 3.74 | -- | 0.343 | 1.6 | -- | -- | -0.18 | 20.9 | 26.6 | 106 | -- | -- |
| 405.78 | 0.941 | 3.8 | -0.178 | -- | -- | -- | -- | -0.509 | -- | -- | -- | -- | -- |
| 388.77 | 0.922 | 3.81 | -- | 0.532 | -- | -- | -- | -0.494 | 0.00392 | -- | -- | -- | -- |
| 356.06 | 0.882 | 3.73 | -- | -- | 1.56 | -- | -- | -0.194 | -- | 26.63 | 58 | -- | -- |
| 406.62 | 0.941 | 3.8 | -- | -- | -- | -- | -- | -0.489 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 346.01 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 5 | 346.81 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 41 | 348.96 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 49 | 349.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 54 | 349.34 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 64 | 349.56 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 78 | 349.74 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 84 | 349.78 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 90 | 349.86 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 92 | 349.95 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 102 | 350.12 | temperature | 25 | 720 | < th | dose dependent | sin | 17 | NA |
| 125 | 350.34 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 135 | 350.45 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 295 | 352.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 299 | 352.33 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 339 | 352.79 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 383 | 353.21 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 423 | 353.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 456 | 353.88 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 459 | 353.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 9 |
| 543 | 354.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 565 | 354.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 15 |
| 586 | 354.62 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 786 | 355.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 21 |
| 805 | 355.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 852 | 355.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 856 | 355.53 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 870 | 355.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 948 | 355.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 13 |