Os06g0704400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, SWIM-type domain containing protein.
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Os06g0704400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, SWIM-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9.33 | 0.144 | 10.8 | 0.397 | 0.267 | -0.147 | -0.00158 | -1.28 | 0.114 | 5.54 | 0.8253 | 4316 | -- | -- |
| 10.44 | 0.15 | 10.9 | 0.128 | 0.279 | -0.109 | -0.0347 | -- | 0.0439 | 5.36 | 41.6 | 2927 | -- | -- |
| 9.33 | 0.142 | 10.8 | 0.397 | 0.266 | -0.149 | -- | -1.28 | 0.113 | 5.55 | 0.7382 | 4312 | -- | -- |
| 10.22 | 0.149 | 10.9 | 0.14 | 0.282 | -0.136 | -- | -- | 0.0297 | 5.71 | 22.82 | 13783 | -- | -- |
| 13.02 | 0.168 | 10.8 | 0.409 | -- | -0.165 | -- | -1.29 | 0.115 | -- | 0.8299 | 4312 | -- | -- |
| 10.83 | 0.154 | 10.9 | 0.132 | 0.273 | -- | 0.0122 | -- | 0.0621 | 5.46 | -- | -- | -- | -- |
| 10.83 | 0.154 | 10.9 | 0.132 | 0.273 | -- | -- | -- | 0.062 | 5.46 | -- | -- | -- | -- |
| 10.49 | 0.151 | 10.9 | 0.141 | -- | 0.33 | -- | -- | 0.0894 | -- | 0.06089 | 672 | -- | -- |
| 10.68 | 0.152 | 10.9 | -- | 0.297 | -0.142 | -- | -- | 0.0091 | 5.57 | 16.73 | 13754 | -- | -- |
| 14.71 | 0.179 | 10.9 | 0.141 | -- | -- | -- | -- | 0.0687 | -- | -- | -- | -- | -- |
| 11.29 | 0.157 | 10.9 | -- | 0.275 | -- | -- | -- | 0.0473 | 5.44 | -- | -- | -- | -- |
| 11.11 | 0.155 | 10.9 | -- | -- | 0.311 | -- | -- | 0.052 | -- | 0.00486 | 649 | -- | -- |
| 15.23 | 0.182 | 10.9 | -- | -- | -- | -- | -- | 0.0531 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.08 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 2 | 9.08 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 9 |
| 3 | 9.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 9 | 9.11 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 11 | 9.12 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 15 | 9.13 | wind | 7.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 16 | 9.13 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 21 | 9.13 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 12 | 2 |
| 25 | 9.14 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 35 | 9.14 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 37 | 9.14 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 43 | 9.15 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 46 | 9.15 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 47 | 9.15 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 53 | 9.16 | wind | 9.0 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 57 | 9.16 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 76 | 9.17 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 87 | 9.17 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 10 |
| 88 | 9.18 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 100 | 9.18 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 125 | 9.19 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 131 | 9.20 | wind | 7.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 132 | 9.20 | wind | 7.0 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 149 | 9.21 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 163 | 9.21 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 199 | 9.22 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 4 |
| 267 | 9.23 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 23 |
| 269 | 9.24 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 270 | 9.24 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 282 | 9.24 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 17 |
| 283 | 9.24 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 285 | 9.24 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 287 | 9.24 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 292 | 9.24 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 325 | 9.24 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 1 | 12 |
| 326 | 9.25 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 329 | 9.25 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 331 | 9.25 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 342 | 9.25 | wind | 3.0 | 43200 | > th | dose dependent | sin | 7 | NA |
| 357 | 9.25 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 372 | 9.25 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 401 | 9.26 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 402 | 9.26 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 409 | 9.26 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 11 |
| 414 | 9.26 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 20 | NA |
| 418 | 9.26 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 23 | NA |
| 420 | 9.26 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 542 | 9.26 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 2 | 15 |
| 546 | 9.26 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 21 | 20 |
| 548 | 9.27 | wind | 9.0 | 43200 | < th | dose independent | sin | 6 | NA |
| 564 | 9.27 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 11 |
| 568 | 9.27 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 20 | NA |
| 587 | 9.27 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 764 | 9.28 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 885 | 9.29 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 960 | 9.29 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 8 |