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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0704100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF547 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.71 (0.0436) R2 : 0.274
β1 : -1.35 (0.159) R2dD : 0.118 R2D : 0.0293
β2 : 0.767 (0.103) R2dC : 0.0878 R2C : 0.0486
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.784 (0.0929) R2dN8 : 0.152 R2N8 : 0.0708
σ : 0.819
deviance : 305.73
__
_____
C
peak time of C : 23.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
284.95 0.793 3.8 -1.83 0.711 4.74 -1.74 -13.5 -0.745 23.5 0.3728 656 -- --
295.42 0.801 3.72 -1.45 0.72 2.07 -1.13 -- -0.796 23.8 1.337 60 -- --
297.56 0.803 3.79 -1.76 0.716 4.76 -- -14.1 -0.745 23.4 0.4134 691 -- --
303.08 0.811 3.71 -1.37 0.76 1.5 -- -- -0.781 23.5 1.5 128 -- --
328.15 0.844 3.77 -1.84 -- 4.46 -- -12.8 -0.745 -- 0.9005 655 -- --
296.5 0.807 3.71 -1.41 0.759 -- -1.46 -- -0.79 23.5 -- -- -- --
305.73 0.819 3.71 -1.35 0.767 -- -- -- -0.784 23.4 -- -- -- --
328.98 0.845 3.69 -1.42 -- 2.91 -- -- -0.77 -- 1.967 642 -- --
352.12 0.874 3.67 -- 0.748 1.14 -- -- -0.629 23.3 1.5 102 -- --
342.55 0.865 3.69 -1.33 -- -- -- -- -0.776 -- -- -- -- --
353.65 0.88 3.67 -- 0.753 -- -- -- -0.634 23.3 -- -- -- --
380.26 0.908 3.65 -- -- 1.83 -- -- -0.604 -- 1.933 713 -- --
389.11 0.921 3.66 -- -- -- -- -- -0.629 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 274.20 humidity 90.0 270 > th dose dependent rect. 20 3
2 274.64 humidity 90.0 270 > th dose dependent rect. 19 5
5 275.21 humidity 90.0 270 > th dose dependent rect. 10 14
7 275.48 humidity 90.0 270 > th dose dependent rect. 13 11
25 276.55 humidity 90.0 30 > th dose dependent rect. 17 8
38 276.81 humidity 90.0 30 > th dose dependent rect. 20 5
62 277.31 humidity 90.0 30 > th dose dependent rect. 8 17
84 277.71 humidity 90.0 270 > th dose independent rect. 10 14
98 277.96 humidity 90.0 270 > th dose independent rect. 13 11
119 278.55 humidity 90.0 270 > th dose independent rect. 19 5
121 278.61 precipitation 0.1 270 > th dose independent rect. 20 2
122 278.61 precipitation 0.1 270 > th dose dependent rect. 20 2
128 278.64 humidity 90.0 30 > th dose dependent rect. 6 19
146 278.99 humidity 90.0 90 < th dose independent rect. 11 21
148 279.01 humidity 90.0 90 > th dose dependent sin 17 NA
166 279.41 humidity 90.0 90 < th dose independent rect. 11 19
197 279.85 temperature 15.0 30 > th dose dependent rect. 20 7
203 279.93 humidity 90.0 90 < th dose independent rect. 11 16
209 280.04 temperature 25.0 10 < th dose dependent rect. 10 1
211 280.07 humidity 90.0 270 > th dose independent sin 18 NA
220 280.17 humidity 80.0 720 > th dose independent rect. 17 2
237 280.49 wind 3.0 720 > th dose independent rect. 11 11
238 280.49 humidity 90.0 270 < th dose independent rect. 17 12
239 280.50 humidity 90.0 270 < th dose independent sin 15 NA
243 280.54 humidity 90.0 720 < th dose independent rect. 15 7
276 280.83 humidity 90.0 720 < th dose independent rect. 20 2
277 280.88 humidity 90.0 270 < th dose dependent rect. 19 10
285 280.97 humidity 90.0 720 < th dose independent rect. 18 4
289 280.98 humidity 90.0 90 < th dose independent rect. 19 11
299 281.08 atmosphere 1000.0 90 < th dose independent rect. 15 11
300 281.10 humidity 90.0 90 > th dose independent rect. 22 1
301 281.10 humidity 90.0 720 < th dose dependent rect. 20 1
333 281.35 atmosphere 1000.0 10 < th dose independent rect. 3 1
341 281.35 atmosphere 1000.0 10 < th dose dependent rect. 3 1
415 281.88 wind 3.0 720 < th dose independent rect. 12 10
425 281.93 wind 3.0 720 > th dose independent rect. 20 1
444 282.07 wind 3.0 720 < th dose independent rect. 10 14
458 282.14 wind 5.0 720 < th dose dependent rect. 12 10
483 282.34 humidity 90.0 10 > th dose dependent rect. 11 17
488 282.37 humidity 90.0 720 < th dose independent rect. 10 12
494 282.40 humidity 90.0 10 > th dose dependent rect. 17 11
512 282.46 humidity 90.0 10 > th dose dependent rect. 8 20
544 282.59 wind 5.0 720 < th dose dependent rect. 10 14
573 282.69 temperature 15.0 30 > th dose dependent rect. 20 5
585 282.70 humidity 90.0 10 > th dose dependent rect. 6 22
593 282.72 wind 9.0 720 < th dose dependent rect. 11 13
597 282.74 humidity 90.0 10 > th dose dependent rect. 20 8
613 282.78 wind 9.0 720 < th dose dependent rect. 12 11
614 282.79 precipitation 0.1 720 < th dose independent rect. 15 6
615 282.79 precipitation 0.1 720 < th dose dependent rect. 15 6
640 282.87 atmosphere 1000.0 270 < th dose dependent rect. 14 10
653 282.94 humidity 90.0 90 > th dose independent rect. 10 18
676 283.04 atmosphere 1000.0 10 < th dose independent rect. 15 12
726 283.20 wind 7.0 43200 > th dose dependent rect. 20 1
758 283.30 humidity 70.0 4320 < th dose independent rect. 15 1
783 283.38 wind 1.0 720 > th dose dependent rect. 10 12
789 283.40 precipitation 0.1 720 < th dose independent rect. 5 16
793 283.40 precipitation 0.1 720 < th dose dependent rect. 5 16
802 283.43 atmosphere 1000.0 90 < th dose independent rect. 14 18
808 283.46 wind 3.0 720 > th dose independent sin 18 NA
811 283.46 precipitation 0.1 4320 > th dose dependent rect. 1 5
872 283.68 precipitation 0.1 4320 > th dose independent rect. 1 5
884 283.71 precipitation 0.1 4320 > th dose dependent rect. 2 3
903 283.76 wind 3.0 270 < th dose independent rect. 20 1
908 283.78 temperature 20.0 10 > th dose independent rect. 20 22
909 283.79 wind 7.0 43200 < th dose independent rect. 20 1
927 283.85 wind 3.0 720 < th dose independent sin 19 NA
936 283.87 precipitation 0.1 4320 < th dose independent rect. 1 5
940 283.87 precipitation 0.1 4320 < th dose dependent rect. 1 5
941 283.87 radiation 1.0 43200 < th dose dependent rect. 21 7
957 283.92 temperature 20.0 270 < th dose independent rect. 6 13
959 283.92 wind 5.0 720 < th dose dependent rect. 7 17
960 283.93 wind 7.0 43200 > th dose independent rect. 20 1
970 283.96 wind 1.0 10 < th dose dependent rect. 14 8
971 283.97 atmosphere 1000.0 270 < th dose independent sin 16 NA
976 283.99 wind 1.0 10 < th dose independent rect. 14 8