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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0703400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.51 (0.0384) R2 : 0.582
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.11 (0.0934) R2dC : 0.483 R2C : 0.517
β3 : 2.23 (0.321) R2dE : 0.0469 R2E : 0.0811
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.368 (0.0811) R2dN8 : 0.0254 R2N8 : 0.01
σ : 0.718
deviance : 237.61
__
_____
C
peak time of C : 22.3
E
wheather : wind
threshold : 7.5
memory length : 655
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
235.12 0.72 4.55 0.00439 2.07 3.06 -0.626 4.43 0.352 22.3 6.81 655 -- --
238.93 0.72 4.51 0.0105 2.14 2.89 -0.456 -- 0.392 22.3 7.654 581 -- --
236.64 0.716 4.54 0.0277 2.07 2.96 -- 3.71 0.357 22.3 6.773 654 -- --
237.51 0.718 4.51 -0.0702 2.11 2.23 -- -- 0.367 22.3 7.579 655 -- --
399.8 0.931 4.49 0.484 -- 3.46 -- 0.47 0.27 -- 2.301 695 -- --
258.07 0.753 4.54 -0.336 2.21 -- -0.821 -- 0.265 22.2 -- -- -- --
260.77 0.756 4.54 -0.303 2.22 -- -- -- 0.267 22.2 -- -- -- --
399.88 0.931 4.48 0.458 -- 3.4 -- -- 0.26 -- 2.182 697 -- --
237.61 0.718 4.51 -- 2.11 2.23 -- -- 0.368 22.3 7.5 655 -- --
559.35 1.11 4.48 -0.27 -- -- -- -- 0.273 -- -- -- -- --
263.19 0.759 4.53 -- 2.21 -- -- -- 0.301 22.2 -- -- -- --
405.05 0.937 4.49 -- -- 3.23 -- -- 0.215 -- 2.221 697 -- --
561.28 1.11 4.47 -- -- -- -- -- 0.303 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 218.57 wind 7 720 < th dose independent rect. 19 20
3 221.67 wind 9 720 < th dose independent rect. 10 14
5 223.63 wind 9 720 < th dose independent rect. 12 10
7 224.07 wind 7 720 < th dose independent rect. 3 21
9 224.60 wind 7 720 < th dose independent rect. 3 13
17 226.60 wind 9 43200 > th dose independent rect. 16 3
18 226.60 wind 7 720 < th dose independent rect. 12 19
22 226.84 wind 7 720 < th dose independent rect. 11 5
30 227.51 atmosphere 1005 14400 < th dose independent rect. 11 1
33 227.76 atmosphere 1005 14400 > th dose independent rect. 11 1
36 227.96 wind 9 43200 < th dose independent rect. 16 3
42 228.38 wind 9 720 < th dose independent rect. 10 23
45 228.68 atmosphere 1005 14400 > th dose independent rect. 10 3
58 229.29 wind 7 720 < th dose independent rect. 19 5
59 229.29 wind 7 270 < th dose independent rect. 19 11
73 229.77 wind 9 43200 > th dose dependent rect. 16 3
81 230.03 wind 5 270 > th dose dependent rect. 15 20
82 230.04 atmosphere 1000 14400 > th dose dependent rect. 5 1
121 230.48 radiation 10 720 < th dose independent rect. 16 11
138 230.59 atmosphere 1005 14400 > th dose independent rect. 3 12
170 230.71 radiation 10 720 < th dose independent rect. 16 3
202 230.85 atmosphere 1000 14400 > th dose dependent sin 7 NA
235 230.95 radiation 20 10 < th dose dependent sin 14 NA
259 231.04 atmosphere 1000 14400 > th dose dependent rect. 11 1
271 231.09 atmosphere 1005 14400 > th dose independent sin 2 NA
328 231.25 atmosphere 1005 14400 < th dose independent rect. 2 13
447 231.49 atmosphere 1015 14400 < th dose dependent rect. 4 1
555 231.65 atmosphere 1000 14400 > th dose dependent no NA NA
561 231.65 atmosphere 1000 14400 > th dose dependent rect. 10 23
573 231.67 atmosphere 1000 14400 > th dose dependent rect. 2 23
579 231.68 temperature 20 90 > th dose dependent rect. 17 11
587 231.68 atmosphere 1000 14400 > th dose dependent rect. 8 23
617 231.72 atmosphere 1015 14400 < th dose dependent rect. 23 8
637 231.74 atmosphere 1005 14400 < th dose independent sin 2 NA
662 231.76 wind 9 720 < th dose dependent rect. 12 3
787 231.90 atmosphere 1015 14400 < th dose dependent rect. 11 1
802 231.91 atmosphere 1015 14400 < th dose dependent rect. 23 13
810 231.92 atmosphere 1015 14400 < th dose dependent rect. 24 1
836 231.95 atmosphere 1005 14400 < th dose independent rect. 3 1
848 231.96 atmosphere 1015 14400 < th dose dependent sin 8 NA
915 232.01 radiation 30 720 < th dose independent rect. 15 4