Os06g0703300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF594 family protein.
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Os06g0703300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF594 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.04 | 0.613 | 4.99 | -1.38 | 1.63 | 2.57 | 0.331 | -3.17 | -0.192 | 22.2 | 20.82 | 3154 | -- | -- |
| 176.63 | 0.619 | 4.91 | -0.863 | 1.66 | 2.8 | 0.461 | -- | -0.0807 | 22.3 | 17.97 | 4785 | -- | -- |
| 170.46 | 0.608 | 4.99 | -1.4 | 1.63 | 2.56 | -- | -3.26 | -0.192 | 22.2 | 20.99 | 3144 | -- | -- |
| 174.73 | 0.616 | 4.88 | -0.642 | 1.65 | 2.69 | -- | -- | 0.0088 | 22.2 | 17.85 | 3143 | -- | -- |
| 279.39 | 0.778 | 4.96 | -1.37 | -- | 3.06 | -- | -3.25 | -0.278 | -- | 21.56 | 2254 | -- | -- |
| 347.2 | 0.874 | 4.75 | 0.553 | 1.75 | -- | 0.293 | -- | 0.591 | 22.4 | -- | -- | -- | -- |
| 347.54 | 0.873 | 4.75 | 0.542 | 1.75 | -- | -- | -- | 0.59 | 22.4 | -- | -- | -- | -- |
| 258.26 | 0.748 | 4.85 | -0.427 | -- | 3.36 | -- | -- | -0.0493 | -- | 19.19 | 843 | -- | -- |
| 180.06 | 0.625 | 4.86 | -- | 1.41 | 2.46 | -- | -- | 0.0804 | 22.3 | 19.46 | 2273 | -- | -- |
| 535.41 | 1.08 | 4.7 | 0.57 | -- | -- | -- | -- | 0.596 | -- | -- | -- | -- | -- |
| 355.27 | 0.882 | 4.76 | -- | 1.76 | -- | -- | -- | 0.53 | 22.4 | -- | -- | -- | -- |
| 262.31 | 0.754 | 4.83 | -- | -- | 3.17 | -- | -- | 0.0361 | -- | 19.94 | 840 | -- | -- |
| 543.98 | 1.09 | 4.72 | -- | -- | -- | -- | -- | 0.533 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.59 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 12 | 168.19 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 13 | 168.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 17 | 168.25 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 23 | 171.11 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 26 | 172.19 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 28 | 172.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 34 | 172.57 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 8 |
| 36 | 172.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 39 | 172.71 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 43 | 172.86 | temperature | 20 | 4320 | > th | dose dependent | sin | 17 | NA |
| 45 | 172.92 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 22 |
| 50 | 172.96 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 54 | 172.98 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 22 |
| 55 | 172.98 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 22 |
| 70 | 173.04 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 75 | 173.06 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 22 |
| 81 | 173.07 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 23 |
| 83 | 173.08 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 84 | 173.08 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 19 |
| 104 | 173.12 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 148 | 173.25 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 172 | 173.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 207 | 173.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 7 |
| 239 | 173.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 245 | 173.85 | radiation | 1 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 254 | 174.01 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 308 | 174.74 | temperature | 20 | 4320 | > th | dose dependent | sin | 4 | NA |
| 380 | 175.40 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 386 | 175.53 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 18 |
| 422 | 176.05 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 18 |
| 430 | 176.13 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 13 |
| 435 | 176.18 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 14 |
| 453 | 176.31 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 455 | 176.32 | temperature | 25 | 4320 | > th | dose independent | sin | 3 | NA |
| 498 | 176.58 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 5 |
| 506 | 176.61 | temperature | 25 | 4320 | < th | dose independent | sin | 2 | NA |
| 540 | 176.77 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 612 | 177.06 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 636 | 177.13 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 677 | 177.24 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 712 | 177.35 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 790 | 177.52 | temperature | 30 | 4320 | < th | dose dependent | rect. | 16 | 7 |
| 833 | 177.60 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 851 | 177.65 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 21 |
| 905 | 177.74 | temperature | 30 | 4320 | < th | dose dependent | rect. | 15 | 10 |
| 948 | 177.86 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 21 |
| 997 | 177.98 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 4 |