Os06g0703100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os06g0703100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.97 | 0.568 | 3 | -0.0071 | 0.116 | -0.685 | -0.251 | -0.0498 | 0.0765 | 4.75 | 1.019 | 29 | -- | -- |
| 145.97 | 0.563 | 3 | -0.00924 | 0.116 | -0.69 | -0.246 | -- | 0.0761 | 4.76 | 1.018 | 28 | -- | -- |
| 146.13 | 0.563 | 3 | -0.00841 | 0.116 | -0.685 | -- | 0.0367 | 0.0767 | 4.8 | 1.021 | 28 | -- | -- |
| 146.13 | 0.563 | 3 | -0.00726 | 0.116 | -0.683 | -- | -- | 0.0771 | 4.82 | 1.023 | 28 | -- | -- |
| 146.72 | 0.564 | 3 | -0.0201 | -- | -0.758 | -- | 0.0949 | 0.0879 | -- | 1.002 | 28 | -- | -- |
| 154.34 | 0.582 | 3.01 | 0.0772 | 0.291 | -- | -0.101 | -- | 0.0572 | 4.55 | -- | -- | -- | -- |
| 154.37 | 0.582 | 3.01 | 0.0779 | 0.291 | -- | -- | -- | 0.0577 | 4.54 | -- | -- | -- | -- |
| 146.72 | 0.564 | 3 | -0.00848 | -- | -0.756 | -- | -- | 0.0821 | -- | 1.058 | 28 | -- | -- |
| 146.13 | 0.563 | 3 | -- | 0.116 | -0.681 | -- | -- | 0.0779 | 4.82 | 1.024 | 28 | -- | -- |
| 158.88 | 0.589 | 3.01 | 0.0891 | -- | -- | -- | -- | 0.0654 | -- | -- | -- | -- | -- |
| 154.53 | 0.581 | 3.01 | -- | 0.292 | -- | -- | -- | 0.049 | 4.53 | -- | -- | -- | -- |
| 146.73 | 0.564 | 3 | -- | -- | -0.755 | -- | -- | 0.083 | -- | 1.029 | 28 | -- | -- |
| 159.09 | 0.589 | 3.01 | -- | -- | -- | -- | -- | 0.0555 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.60 | wind | 9.0 | 30 | > th | dose independent | rect. | 1 | 10 |
| 5 | 129.60 | wind | 9.0 | 30 | > th | dose dependent | rect. | 1 | 10 |
| 9 | 129.65 | wind | 9.0 | 10 | > th | dose independent | rect. | 19 | 16 |
| 10 | 129.65 | wind | 9.0 | 10 | > th | dose dependent | rect. | 19 | 16 |
| 11 | 129.66 | wind | 5.0 | 10 | > th | dose independent | rect. | 10 | 1 |
| 17 | 129.66 | wind | 5.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 23 | 129.67 | humidity | 60.0 | 10 | < th | dose independent | rect. | 10 | 1 |
| 25 | 129.67 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 334 | 137.64 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 335 | 137.64 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 339 | 137.67 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 344 | 137.71 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 345 | 137.72 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 351 | 137.76 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 354 | 137.79 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 356 | 137.80 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 358 | 137.80 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 359 | 137.80 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 362 | 137.80 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 363 | 137.80 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 365 | 137.80 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 370 | 137.80 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 371 | 137.80 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 372 | 137.80 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 374 | 137.80 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 379 | 137.80 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 392 | 138.03 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 405 | 138.32 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 406 | 138.39 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 417 | 138.73 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 419 | 138.73 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 422 | 138.73 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 426 | 138.73 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 436 | 138.73 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 437 | 138.73 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 457 | 138.73 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 465 | 138.75 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 517 | 139.63 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 540 | 140.73 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 541 | 140.73 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 547 | 141.05 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 570 | 142.32 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 599 | 143.86 | wind | 1.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 600 | 143.90 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 602 | 143.90 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 605 | 143.94 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 608 | 143.94 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 628 | 144.19 | wind | 9.0 | 10 | > th | dose independent | sin | 10 | NA |
| 630 | 144.47 | wind | 1.0 | 30 | > th | dose independent | sin | 12 | NA |
| 637 | 144.70 | wind | 9.0 | 10 | < th | dose independent | sin | 8 | NA |
| 640 | 144.77 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 641 | 144.86 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 23 | 1 |
| 650 | 145.09 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 663 | 145.56 | wind | 1.0 | 30 | < th | dose independent | rect. | 22 | 9 |
| 665 | 145.59 | wind | 1.0 | 30 | < th | dose independent | sin | 12 | NA |
| 694 | 146.08 | wind | 1.0 | 10 | > th | dose independent | rect. | 7 | 23 |
| 712 | 146.16 | wind | 1.0 | 30 | < th | dose independent | rect. | 22 | 5 |
| 732 | 146.24 | wind | 1.0 | 30 | > th | dose independent | no | NA | NA |
| 741 | 146.26 | wind | 1.0 | 30 | < th | dose dependent | rect. | 22 | 8 |
| 757 | 146.31 | wind | 1.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 769 | 146.50 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 864 | 146.80 | wind | 1.0 | 30 | < th | dose independent | rect. | 4 | 23 |
| 874 | 146.83 | wind | 1.0 | 30 | < th | dose dependent | sin | 12 | NA |
| 876 | 146.84 | wind | 1.0 | 30 | < th | dose independent | rect. | 12 | 19 |
| 912 | 147.02 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 23 |
| 917 | 147.04 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 20 | 5 |
| 923 | 147.06 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 15 | 16 |
| 958 | 147.18 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 23 | 7 |
| 960 | 147.19 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 962 | 147.20 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 970 | 147.29 | wind | 1.0 | 30 | < th | dose dependent | rect. | 23 | 4 |
| 983 | 147.35 | wind | 1.0 | 30 | < th | dose dependent | rect. | 12 | 18 |
| 986 | 147.36 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 3 | 16 |