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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0703000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.52 (0.0578) R2 : 0.307
β1 : 1.05 (0.211) R2dD : 0.0393 R2D : -0.0014
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.24 (0.262) R2dE : 0.352 R2E : -0.00463
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 12.4 (1.14) R2dD*E : 0.26 R2D*E : -0.0771
γ1 : -0.198 (0.125) R2dN8 : 0.00615 R2N8 : 0.00829
σ : 1.05
deviance : 508.85
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_____
C
peak time of C : --
E
wheather : wind
threshold : 5.614
memory length : 3966
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 4.87

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
499.31 1.05 3.53 1.04 0.281 3.27 1.52 12.6 -0.212 17.1 5.508 3959 18 5.06
665.56 1.2 3.54 1.13 0.302 3.03 1.05 -- -0.219 17.1 5.604 9509 18.1 5.11
503.76 1.05 3.53 1.06 0.314 3.26 -- 12.3 -0.217 15.4 5.572 3978 18 5.08
640.44 1.18 3.49 1.27 0.283 3.02 -- -- -0.0728 15 5.842 9495 18.7 3.11
508.85 1.05 3.52 1.05 -- 3.24 -- 12.4 -0.198 -- 5.614 3966 18 4.87
699.53 1.24 3.46 0.573 0.289 -- 1.02 -- -0.409 16.2 -- -- -- --
701.28 1.24 3.45 0.585 0.316 -- -- -- -0.404 14.4 -- -- -- --
637.64 1.18 3.37 0.961 -- 2.8 -- -- -0.291 -- 7.275 9551 18.7 3.15
642.29 1.18 3.56 -- 0.72 2.36 -- -- -0.203 16 6.809 9533 19 2
707.16 1.24 3.46 0.572 -- -- -- -- -0.411 -- -- -- -- --
710.3 1.25 3.47 -- 0.304 -- -- -- -0.469 14.4 -- -- -- --
522.88 1.07 3.5 -- -- 3.53 -- -- -0.323 -- 9.442 3824 18.6 2.34
715.78 1.25 3.47 -- -- -- -- -- -0.475 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 504.85 wind 7 4320 < th dose independent rect. 18 3
2 505.51 wind 7 4320 < th dose independent rect. 18 5
5 509.84 wind 7 4320 > th dose independent rect. 18 3
6 511.94 wind 7 4320 > th dose independent rect. 18 5
14 514.50 wind 5 4320 > th dose dependent rect. 18 5
16 516.13 wind 9 4320 < th dose independent rect. 20 4
25 517.32 wind 9 4320 > th dose independent rect. 18 8
33 517.79 wind 9 4320 > th dose dependent rect. 19 7
55 518.85 humidity 90 1440 < th dose dependent rect. 23 8
61 519.23 humidity 80 1440 < th dose independent rect. 22 1
73 520.15 wind 5 4320 > th dose dependent rect. 20 3
81 521.81 humidity 80 1440 > th dose independent rect. 22 1
112 525.61 wind 5 4320 > th dose independent rect. 21 1
114 525.74 humidity 90 1440 < th dose dependent rect. 2 5
128 527.24 wind 7 4320 < th dose independent rect. 8 1
133 527.99 humidity 90 1440 < th dose dependent rect. 3 1
137 528.24 wind 7 4320 > th dose independent rect. 8 1
144 530.43 humidity 90 1440 < th dose dependent rect. 23 5
150 531.19 humidity 90 1440 < th dose dependent rect. 5 2
175 536.17 humidity 90 1440 < th dose dependent rect. 24 1
176 536.42 humidity 80 1440 < th dose independent rect. 21 4
187 538.89 humidity 70 1440 > th dose dependent rect. 24 7
194 539.54 atmosphere 995 14400 > th dose independent rect. 17 4
200 540.40 atmosphere 995 14400 > th dose independent rect. 17 1
209 540.94 atmosphere 995 14400 < th dose independent rect. 17 1
210 540.94 atmosphere 995 14400 < th dose dependent rect. 17 1
268 543.56 humidity 70 1440 > th dose dependent rect. 5 2
273 543.89 atmosphere 995 14400 > th dose independent rect. 6 15
278 544.13 atmosphere 995 14400 > th dose independent rect. 13 8
293 544.69 atmosphere 995 14400 > th dose independent rect. 10 11
341 545.10 humidity 80 1440 > th dose independent rect. 6 1
379 545.98 atmosphere 995 14400 > th dose independent sin 22 NA
393 546.16 atmosphere 995 14400 < th dose independent sin 22 NA
423 546.65 humidity 70 1440 > th dose dependent rect. 23 5
500 547.33 atmosphere 1000 4320 < th dose dependent rect. 12 1
579 547.72 humidity 70 1440 > th dose dependent rect. 3 4
731 548.50 atmosphere 995 14400 < th dose dependent sin 22 NA
735 548.54 atmosphere 995 14400 > th dose independent rect. 17 23
749 548.62 humidity 70 1440 > th dose dependent rect. 24 2
797 548.83 atmosphere 995 14400 > th dose independent rect. 12 23
798 548.83 atmosphere 995 14400 > th dose independent rect. 14 23
799 548.83 atmosphere 995 14400 > th dose independent rect. 20 23
800 548.84 atmosphere 995 14400 > th dose independent no NA NA
803 548.84 atmosphere 995 14400 > th dose independent rect. 10 23
830 548.91 atmosphere 995 14400 > th dose independent rect. 14 21
913 549.27 atmosphere 995 14400 < th dose independent rect. 18 23
926 549.47 atmosphere 995 14400 < th dose independent no NA NA