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Os06g0702500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Galactokinase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0196) R2 : 0.702
β1 : -1.13 (0.0744) R2dD : 0.176 R2D : 0.103
β2 : 0.918 (0.0506) R2dC : 0.226 R2C : 0.307
β3 : -1.5 (0.0889) R2dE : 0.249 R2E : 0.266
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.163 (0.0452) R2dN8 : 0.0139 R2N8 : 0.0609
σ : 0.358
deviance : 58.95
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C
peak time of C : 16.9
E
wheather : temperature
threshold : 27.75
memory length : 641
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.84 0.351 10.1 -1.45 0.884 -1.46 0.101 1.72 0.0861 16.9 28.5 620 -- --
58.89 0.357 10 -1.13 0.92 -1.5 -0.141 -- 0.164 16.9 27.79 643 -- --
55.86 0.348 10.1 -1.45 0.884 -1.47 -- 1.7 0.0861 16.9 28.54 621 -- --
58.95 0.358 10 -1.13 0.918 -1.5 -- -- 0.163 16.9 27.75 641 -- --
79.88 0.416 10.1 -1.78 -- -2.17 -- 2.61 -0.0262 -- 30.28 366 -- --
91.42 0.448 9.95 -0.71 1.14 -- -0.0216 -- 0.489 17.8 -- -- -- --
91.42 0.448 9.95 -0.71 1.14 -- -- -- 0.489 17.8 -- -- -- --
81.99 0.422 10 -1.26 -- -2.11 -- -- 0.0377 -- 29.5 389 -- --
88.37 0.438 9.98 -- 0.985 -0.989 -- -- 0.374 17.3 27.61 611 -- --
159.1 0.589 9.93 -0.746 -- -- -- -- 0.462 -- -- -- -- --
104.71 0.479 9.93 -- 1.15 -- -- -- 0.568 17.7 -- -- -- --
120.04 0.51 9.98 -- -- -1.69 -- -- 0.257 -- 29.68 368 -- --
173.76 0.615 9.91 -- -- -- -- -- 0.544 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.65 temperature 15 720 > th dose dependent rect. 16 19
5 56.11 temperature 30 720 < th dose dependent rect. 24 23
7 56.17 temperature 15 720 > th dose dependent rect. 14 21
9 56.20 temperature 30 720 < th dose dependent rect. 8 23
10 56.21 temperature 30 720 < th dose dependent rect. 4 23
17 56.47 temperature 15 720 > th dose dependent rect. 16 21
19 56.47 temperature 30 720 < th dose dependent rect. 13 23
20 56.48 temperature 30 720 < th dose dependent no NA NA
25 56.54 temperature 30 720 < th dose dependent rect. 17 23
26 56.56 temperature 30 720 < th dose dependent rect. 15 23
27 56.57 temperature 10 720 > th dose dependent rect. 21 22
36 56.78 temperature 10 720 > th dose dependent rect. 16 23
38 56.78 temperature 30 720 < th dose dependent rect. 22 23
54 56.97 temperature 10 720 > th dose dependent rect. 14 23
63 57.06 temperature 15 1440 > th dose dependent rect. 9 19
67 57.07 temperature 10 720 > th dose dependent rect. 12 23
97 57.13 temperature 10 1440 > th dose dependent rect. 1 23
109 57.15 temperature 30 1440 < th dose dependent rect. 8 19
142 57.19 temperature 30 1440 < th dose dependent rect. 7 17
179 57.22 temperature 10 1440 > th dose dependent no NA NA
187 57.22 temperature 10 1440 > th dose dependent rect. 23 23
191 57.23 temperature 30 1440 < th dose dependent rect. 5 19
234 57.26 temperature 15 1440 > th dose dependent sin 16 NA
235 57.26 temperature 10 1440 > th dose dependent rect. 15 12
363 57.34 temperature 15 1440 > th dose dependent rect. 15 9
433 57.40 temperature 30 1440 < th dose dependent sin 17 NA
655 57.61 temperature 30 1440 < th dose dependent rect. 15 9
662 57.62 temperature 30 1440 < th dose dependent rect. 13 14
683 57.64 temperature 30 1440 < th dose dependent rect. 15 11
719 57.68 temperature 10 1440 > th dose dependent sin 1 NA