Os06g0702400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0702400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.79 | 0.273 | 9.68 | 0.696 | 0.802 | -0.645 | 0.383 | 3 | 0.0652 | 19.3 | 30.05 | 1394 | -- | -- |
| 34.05 | 0.272 | 9.74 | 0.109 | 0.781 | -0.352 | 0.306 | -- | 0.117 | 19.2 | 28.9 | 2824 | -- | -- |
| 34.19 | 0.272 | 9.68 | 0.692 | 0.804 | -0.649 | -- | 3.01 | 0.0656 | 19.3 | 30.05 | 1394 | -- | -- |
| 33.43 | 0.269 | 9.74 | 0.0354 | 0.808 | -0.351 | -- | -- | 0.136 | 19.2 | 29.2 | 10201 | -- | -- |
| 68.09 | 0.384 | 9.69 | 0.515 | -- | -0.574 | -- | 2.31 | 0.0621 | -- | 29.92 | 1431 | -- | -- |
| 40.11 | 0.297 | 9.75 | -0.0432 | 0.796 | -- | 0.421 | -- | 0.0765 | 19.1 | -- | -- | -- | -- |
| 40.58 | 0.298 | 9.75 | -0.0515 | 0.797 | -- | -- | -- | 0.0774 | 19.1 | -- | -- | -- | -- |
| 66.03 | 0.378 | 9.71 | 0.0248 | -- | -0.388 | -- | -- | 0.148 | -- | 29.1 | 8595 | -- | -- |
| 32.91 | 0.267 | 9.72 | -- | 0.783 | -0.406 | -- | -- | 0.224 | 19.2 | 29.1 | 10022 | -- | -- |
| 74.04 | 0.402 | 9.73 | -0.0671 | -- | -- | -- | -- | 0.063 | -- | -- | -- | -- | -- |
| 40.65 | 0.298 | 9.75 | -- | 0.797 | -- | -- | -- | 0.0831 | 19.1 | -- | -- | -- | -- |
| 65.9 | 0.378 | 9.7 | -- | -- | -0.409 | -- | -- | 0.189 | -- | 29.5 | 8612 | -- | -- |
| 74.16 | 0.402 | 9.73 | -- | -- | -- | -- | -- | 0.0705 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.51 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 2 | 30.60 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 7 | 30.81 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 9 | 30.88 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 13 | 30.97 | wind | 7 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 20 | 31.03 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 21 | 31.03 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 10 |
| 30 | 31.06 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 44 | 31.10 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 85 | 31.20 | wind | 7 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 142 | 31.31 | temperature | 25 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 151 | 31.33 | wind | 1 | 43200 | > th | dose dependent | rect. | 8 | 5 |
| 170 | 31.36 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 174 | 31.37 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 194 | 31.39 | wind | 9 | 43200 | < th | dose dependent | sin | 6 | NA |
| 206 | 31.40 | wind | 5 | 14400 | > th | dose dependent | rect. | 10 | 2 |
| 214 | 31.41 | wind | 1 | 43200 | > th | dose dependent | sin | 6 | NA |
| 229 | 31.43 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 230 | 31.43 | temperature | 25 | 14400 | > th | dose dependent | rect. | 2 | 4 |
| 236 | 31.44 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 301 | 31.52 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 309 | 31.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 310 | 31.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 403 | 31.63 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 441 | 31.66 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 461 | 31.67 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 538 | 31.72 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 544 | 31.73 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 570 | 31.75 | temperature | 25 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 594 | 31.77 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 7 |
| 623 | 31.81 | wind | 3 | 43200 | > th | dose independent | sin | 7 | NA |
| 685 | 31.87 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 696 | 31.87 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 705 | 31.88 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 709 | 31.88 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 738 | 31.91 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 756 | 31.92 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 774 | 31.93 | wind | 5 | 43200 | < th | dose independent | rect. | 1 | 15 |
| 797 | 31.95 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 805 | 31.96 | wind | 3 | 43200 | < th | dose independent | sin | 7 | NA |
| 806 | 31.96 | wind | 5 | 43200 | < th | dose independent | sin | 3 | NA |
| 809 | 31.96 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 814 | 31.96 | radiation | 10 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 827 | 31.97 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 863 | 31.98 | radiation | 40 | 4320 | > th | dose dependent | rect. | 13 | 20 |
| 864 | 31.99 | wind | 5 | 43200 | > th | dose independent | sin | 3 | NA |
| 896 | 32.02 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 912 | 32.02 | radiation | 40 | 4320 | > th | dose dependent | rect. | 13 | 2 |
| 947 | 32.04 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 949 | 32.04 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 950 | 32.04 | wind | 5 | 43200 | < th | dose independent | rect. | 21 | 19 |
| 964 | 32.05 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 15 |