Os06g0702200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0702200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.94 | 0.637 | 4.57 | 0.891 | 0.284 | 1.08 | -1.58 | 1.21 | 0.614 | 1.27 | 21.26 | 986 | -- | -- |
| 187.76 | 0.638 | 4.59 | 0.751 | 0.287 | 0.953 | -1.24 | -- | 0.591 | 1.36 | 21.3 | 970 | -- | -- |
| 191.18 | 0.644 | 4.6 | 0.689 | 0.407 | 1.1 | -- | 0.454 | 0.53 | 2.76 | 21.3 | 971 | -- | -- |
| 190.44 | 0.643 | 4.6 | 0.628 | 0.438 | 1.06 | -- | -- | 0.512 | 4.22 | 21.3 | 858 | -- | -- |
| 198.15 | 0.656 | 4.59 | 0.786 | -- | 1.14 | -- | 0.675 | 0.573 | -- | 21.23 | 980 | -- | -- |
| 218.66 | 0.693 | 4.55 | 0.988 | 0.44 | -- | -1.43 | -- | 0.817 | 1.71 | -- | -- | -- | -- |
| 225.81 | 0.704 | 4.54 | 1.03 | 0.467 | -- | -- | -- | 0.823 | 2.79 | -- | -- | -- | -- |
| 199.26 | 0.657 | 4.61 | 0.633 | -- | 1.08 | -- | -- | 0.535 | -- | 21.32 | 966 | -- | -- |
| 199.86 | 0.658 | 4.6 | -- | 0.401 | 1.22 | -- | -- | 0.481 | 4.31 | 21.2 | 892 | -- | -- |
| 238.47 | 0.722 | 4.54 | 1.05 | -- | -- | -- | -- | 0.835 | -- | -- | -- | -- | -- |
| 253.86 | 0.745 | 4.57 | -- | 0.488 | -- | -- | -- | 0.708 | 2.81 | -- | -- | -- | -- |
| 208.07 | 0.672 | 4.63 | -- | -- | 1.29 | -- | -- | 0.44 | -- | 21.1 | 984 | -- | -- |
| 267.65 | 0.764 | 4.57 | -- | -- | -- | -- | -- | 0.718 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 184.21 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 20 |
| 6 | 184.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 7 | 184.93 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 16 |
| 22 | 185.74 | temperature | 20 | 90 | > th | dose dependent | sin | 7 | NA |
| 36 | 186.08 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 69 | 186.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 86 | 187.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 106 | 187.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 119 | 188.20 | temperature | 20 | 270 | > th | dose independent | sin | 5 | NA |
| 210 | 189.63 | temperature | 20 | 720 | > th | dose independent | sin | 16 | NA |
| 244 | 189.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 263 | 190.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 12 |
| 264 | 190.13 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 269 | 190.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 272 | 190.24 | temperature | 25 | 90 | < th | dose dependent | rect. | 18 | 20 |
| 343 | 190.77 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 359 | 190.86 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 393 | 191.09 | temperature | 25 | 90 | < th | dose dependent | sin | 5 | NA |
| 437 | 191.30 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 8 |
| 440 | 191.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 471 | 191.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 475 | 191.54 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 11 |
| 490 | 191.64 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 8 |
| 498 | 191.67 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 504 | 191.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 5 |
| 556 | 191.86 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 607 | 192.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 17 |
| 620 | 192.04 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 623 | 192.06 | temperature | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 668 | 192.18 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 672 | 192.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 673 | 192.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 694 | 192.25 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 727 | 192.36 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 769 | 192.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 774 | 192.44 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 795 | 192.48 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 839 | 192.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 21 |
| 857 | 192.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 904 | 192.71 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 937 | 192.77 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 22 |